RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 NISCHQ9Y2I1 1504 aa60.14■■■■■ 7.22
SSBP3-202ENST00000357475 CCDC180Q9P1Z9 1646 aa53.01■■■■■ 6.08
SSBP3-202ENST00000357475 ABCC9O60706 1549 aa51.11■■■■■ 5.77
SSBP3-202ENST00000357475 ZCCHC6Q5VYS8 1495 aaKnown RBP50.3■■■■■ 5.64
SSBP3-202ENST00000357475 DCAF8L2P0C7V8 631 aa49.92■■■■■ 5.58
SSBP3-202ENST00000357475 DCAF1Q9Y4B6 1507 aa49.69■■■■■ 5.55
SSBP3-202ENST00000357475 NACADO15069 1562 aa49.58■■■■■ 5.53
SSBP3-202ENST00000357475 MYO15BQ96JP2 1530 aa49.51■■■■■ 5.52
SSBP3-202ENST00000357475 RB1CC1Q8TDY2 1594 aa49.43■■■■■ 5.5
SSBP3-202ENST00000357475 SCRIBQ14160 1630 aa48.6■■■■■ 5.37
SSBP3-202ENST00000357475 UNC13AQ9UPW8 1703 aa48.55■■■■■ 5.36
SSBP3-202ENST00000357475 SHROOM4Q9ULL8 1493 aa48.24■■■■■ 5.31
SSBP3-202ENST00000357475 BICRAQ9NZM4 1560 aa48.05■■■■■ 5.28
SSBP3-202ENST00000357475 PABPN1Q86U42 306 aaKnown RBP eCLIP47.94■■■■■ 5.26
SSBP3-202ENST00000357475 CECR2Q9BXF3 1484 aa46.85■■■■■ 5.09
SSBP3-202ENST00000357475 EIF4G1Q04637 1599 aaKnown RBP46.65■■■■■ 5.06
SSBP3-202ENST00000357475 SMARCA4P51532 1647 aa46.5■■■■■ 5.03
SSBP3-202ENST00000357475 BAZ1AQ9NRL2 1556 aaPredicted RBP46.5■■■■■ 5.03
SSBP3-202ENST00000357475 MROH2BQ7Z745 1585 aa46.45■■■■■ 5.03
SSBP3-202ENST00000357475 CC2D2AQ9P2K1 1620 aa46.26■■■■■ 5
SSBP3-202ENST00000357475 RSF1Q96T23 1441 aaPredicted RBP46.19■■■■■ 4.99
SSBP3-202ENST00000357475 DNAJC5BQ9UF47 199 aa46.13■■■■■ 4.98
SSBP3-202ENST00000357475 WIZO95785 1651 aa46.04■■■■■ 4.96
SSBP3-202ENST00000357475 ATAD2BQ9ULI0 1458 aa45.98■■■■■ 4.95
SSBP3-202ENST00000357475 PEG3Q9GZU2 1588 aa45.96■■■■■ 4.95
SSBP3-202ENST00000357475 SMARCA2P51531 1590 aa45.89■■■■■ 4.94
SSBP3-202ENST00000357475 SUPT5HO00267 1087 aaKnown RBP45.78■■■■■ 4.92
SSBP3-202ENST00000357475 NCAPD3P42695 1498 aa45.75■■■■■ 4.91
SSBP3-202ENST00000357475 BAZ1BQ9UIG0 1483 aaKnown RBP45.63■■■■■ 4.9
SSBP3-202ENST00000357475 HMGXB3Q12766 1538 aa45.62■■■■■ 4.89
SSBP3-202ENST00000357475 TOP2AP11388 1531 aaKnown RBP45.48■■■■■ 4.87
SSBP3-202ENST00000357475 CCDC88BA6NC98 1476 aa44.99■■■■■ 4.79
SSBP3-202ENST00000357475 NESP48681 1621 aa44.55■■■■■ 4.72
SSBP3-202ENST00000357475 CADPSQ9ULU8 1353 aa44.48■■■■■ 4.71
SSBP3-202ENST00000357475 CFTRP13569 1480 aa44.43■■■■■ 4.7
SSBP3-202ENST00000357475 LAMC3Q9Y6N6 1575 aa44.41■■■■■ 4.7
SSBP3-202ENST00000357475 PRDM2Q13029 1718 aa44.25■■■■■ 4.67
SSBP3-202ENST00000357475 KIF21AQ7Z4S6 1674 aa44.05■■■■■ 4.64
SSBP3-202ENST00000357475 PDS5BQ9NTI5 1447 aa44.02■■■■■ 4.64
SSBP3-202ENST00000357475 FANCD2Q9BXW9 1451 aa44.02■■■■■ 4.64
SSBP3-202ENST00000357475 ERCC6Q03468 1493 aa43.88■■■■■ 4.62
SSBP3-202ENST00000357475 CEP164Q9UPV0 1460 aa43.85■■■■■ 4.61
SSBP3-202ENST00000357475 ABCC8Q09428 1581 aa43.72■■■■■ 4.59
SSBP3-202ENST00000357475 THOC2Q8NI27 1593 aaKnown RBP43.62■■■■■ 4.57
SSBP3-202ENST00000357475 MRC2Q9UBG0 1479 aa43.59■■■■■ 4.57
SSBP3-202ENST00000357475 URB2Q14146 1524 aaKnown RBP43.58■■■■■ 4.57
SSBP3-202ENST00000357475 CUX1P39880 1505 aa43.51■■■■■ 4.56
SSBP3-202ENST00000357475 WRNQ14191 1432 aaPredicted RBP eCLIP43.48■■■■■ 4.557e-6■■■■■ 31.3
SSBP3-202ENST00000357475 SYNJ1O43426 1573 aa43.45■■■■■ 4.55
SSBP3-202ENST00000357475 TOPBP1Q92547 1522 aa43.44■■■■■ 4.55
SSBP3-202ENST00000357475 DNMBPQ6XZF7 1577 aa43.44■■■■■ 4.54
SSBP3-202ENST00000357475 WDR62O43379 1518 aa43.44■■■■■ 4.54
SSBP3-202ENST00000357475 BIVM-ERCC5R4GMW8 1640 aa43.33■■■■■ 4.53
SSBP3-202ENST00000357475 TOP2BQ02880 1626 aa43.32■■■■■ 4.53
SSBP3-202ENST00000357475 CHIC1Q5VXU3 224 aa43.24■■■■■ 4.51
SSBP3-202ENST00000357475 FGD5Q6ZNL6 1462 aa43.18■■■■■ 4.5
SSBP3-202ENST00000357475 POLA1P09884 1462 aaPredicted RBP43.14■■■■■ 4.5
SSBP3-202ENST00000357475 TRIM41Q8WV44 630 aa43.09■■■■■ 4.49
SSBP3-202ENST00000357475 CUX2O14529 1486 aa43.07■■■■■ 4.49
SSBP3-202ENST00000357475 RAD54L2Q9Y4B4 1467 aa43.01■■■■■ 4.48
SSBP3-202ENST00000357475 SOGA1O94964 1423 aa42.93■■■■■ 4.46
SSBP3-202ENST00000357475 TARBP1Q13395 1621 aaKnown RBP42.93■■■■■ 4.46
SSBP3-202ENST00000357475 IFT140Q96RY7 1462 aa42.86■■■■■ 4.45
SSBP3-202ENST00000357475 WDR97A6NE52 1622 aa42.83■■■■■ 4.45
SSBP3-202ENST00000357475 ABCA10Q8WWZ4 1543 aa42.74■■■■■ 4.43
SSBP3-202ENST00000357475 ZNF608Q9ULD9 1512 aaPredicted RBP42.74■■■■■ 4.43
SSBP3-202ENST00000357475 TDRD9Q8NDG6 1382 aaKnown RBP42.64■■■■■ 4.42
SSBP3-202ENST00000357475 EIF4G3O43432 1585 aaKnown RBP42.59■■■■■ 4.41
SSBP3-202ENST00000357475 RUSC2Q8N2Y8 1516 aa42.58■■■■■ 4.41
SSBP3-202ENST00000357475 AQRO60306 1485 aaKnown RBP eCLIP42.58■■■■■ 4.411e-7■■■■■ 27.3
SSBP3-202ENST00000357475 ABCA5Q8WWZ7 1642 aa42.57■■■■■ 4.4
SSBP3-202ENST00000357475 KIF27Q86VH2 1401 aa42.46■■■■■ 4.39
SSBP3-202ENST00000357475 GAPVD1Q14C86 1478 aa42.46■■■■■ 4.39
SSBP3-202ENST00000357475 PBRM1Q86U86 1689 aa42.41■■■■■ 4.38
SSBP3-202ENST00000357475 FAM9AQ8IZU1 332 aaPredicted RBP42.32■■■■■ 4.37
SSBP3-202ENST00000357475 GRIN2BQ13224 1484 aa42.29■■■■■ 4.36
SSBP3-202ENST00000357475 IGF1RP08069 1367 aa42.24■■■■■ 4.35
SSBP3-202ENST00000357475 ERICH3Q5RHP9 1530 aa42.23■■■■■ 4.35
SSBP3-202ENST00000357475 SNAPC4Q5SXM2 1469 aa42.19■■■■■ 4.34
SSBP3-202ENST00000357475 EEA1Q15075 1411 aa42.19■■■■■ 4.34
SSBP3-202ENST00000357475 CSRNP3Q8WYN3 585 aa42.1■■■■■ 4.33
SSBP3-202ENST00000357475 ADAMTS12P58397 1594 aa42.08■■■■■ 4.33
SSBP3-202ENST00000357475 MAGI1Q96QZ7 1491 aaPredicted RBP42.07■■■■■ 4.32
SSBP3-202ENST00000357475 CUL7Q14999 1698 aa42.05■■■■■ 4.32
SSBP3-202ENST00000357475 CARMIL1Q5VZK9 1371 aa41.97■■■■■ 4.31
SSBP3-202ENST00000357475 FHAD1B1AJZ9 1412 aa41.96■■■■■ 4.31
SSBP3-202ENST00000357475 PRXQ9BXM0 1461 aa41.94■■■■■ 4.3
SSBP3-202ENST00000357475 SYNJ2O15056 1496 aa41.92■■■■■ 4.3
SSBP3-202ENST00000357475 CHD1O14646 1710 aa41.92■■■■■ 4.3
SSBP3-202ENST00000357475 FBLN2P98095 1184 aa41.85■■■■■ 4.29
SSBP3-202ENST00000357475 RAPGEF2Q9Y4G8 1499 aa41.83■■■■■ 4.29
SSBP3-202ENST00000357475 KIF21BO75037 1637 aa41.82■■■■■ 4.29
SSBP3-202ENST00000357475 CHMP7Q8WUX9 453 aaPredicted RBP41.81■■■■■ 4.28
SSBP3-202ENST00000357475 GRIN2AQ12879 1464 aa41.8■■■■■ 4.28
SSBP3-202ENST00000357475 EHMT2Q96KQ7 1210 aa41.79■■■■■ 4.28
SSBP3-202ENST00000357475 CEP170Q5SW79 1584 aa41.63■■■■■ 4.25
SSBP3-202ENST00000357475 GOLGA3Q08378 1498 aa41.62■■■■■ 4.25
SSBP3-202ENST00000357475 LOC105371045A0A1W2PR82 267 aa41.57■■■■■ 4.25
SSBP3-202ENST00000357475 NUP160Q12769 1436 aa41.55■■■■■ 4.24
SSBP3-202ENST00000357475 CTTNBP2Q8WZ74 1663 aa41.47■■■■■ 4.23
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms