RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 NISCHQ9Y2I1 1504 aa60.62■■■■■ 7.29
LSM6-202ENST00000502781 CCDC180Q9P1Z9 1646 aa53.7■■■■■ 6.19
LSM6-202ENST00000502781 ABCC9O60706 1549 aa52.23■■■■■ 5.95
LSM6-202ENST00000502781 ZCCHC6Q5VYS8 1495 aaKnown RBP50.58■■■■■ 5.69
LSM6-202ENST00000502781 NACADO15069 1562 aa50.45■■■■■ 5.67
LSM6-202ENST00000502781 RB1CC1Q8TDY2 1594 aa50.39■■■■■ 5.66
LSM6-202ENST00000502781 DCAF8L2P0C7V8 631 aa50.39■■■■■ 5.66
LSM6-202ENST00000502781 MYO15BQ96JP2 1530 aa50.33■■■■■ 5.65
LSM6-202ENST00000502781 DCAF1Q9Y4B6 1507 aa50.21■■■■■ 5.63
LSM6-202ENST00000502781 UNC13AQ9UPW8 1703 aa49.19■■■■■ 5.46
LSM6-202ENST00000502781 SCRIBQ14160 1630 aa48.97■■■■■ 5.43
LSM6-202ENST00000502781 BICRAQ9NZM4 1560 aa48.91■■■■■ 5.42
LSM6-202ENST00000502781 PABPN1Q86U42 306 aaKnown RBP eCLIP48.88■■■■■ 5.41
LSM6-202ENST00000502781 SHROOM4Q9ULL8 1493 aa48.46■■■■■ 5.35
LSM6-202ENST00000502781 DNAJC5BQ9UF47 199 aa47.74■■■■■ 5.23
LSM6-202ENST00000502781 EIF4G1Q04637 1599 aaKnown RBP47.57■■■■■ 5.21
LSM6-202ENST00000502781 CC2D2AQ9P2K1 1620 aa47.27■■■■■ 5.16
LSM6-202ENST00000502781 CECR2Q9BXF3 1484 aa47.19■■■■■ 5.14
LSM6-202ENST00000502781 BAZ1AQ9NRL2 1556 aaPredicted RBP46.94■■■■■ 5.1
LSM6-202ENST00000502781 SMARCA4P51532 1647 aa46.93■■■■■ 5.1
LSM6-202ENST00000502781 MROH2BQ7Z745 1585 aa46.71■■■■■ 5.07
LSM6-202ENST00000502781 ATAD2BQ9ULI0 1458 aa46.64■■■■■ 5.06
LSM6-202ENST00000502781 NCAPD3P42695 1498 aa46.61■■■■■ 5.05
LSM6-202ENST00000502781 SMARCA2P51531 1590 aa46.57■■■■■ 5.05
LSM6-202ENST00000502781 PEG3Q9GZU2 1588 aa46.53■■■■■ 5.04
LSM6-202ENST00000502781 HMGXB3Q12766 1538 aa46.37■■■■■ 5.01
LSM6-202ENST00000502781 RSF1Q96T23 1441 aaPredicted RBP46.33■■■■■ 5.01
LSM6-202ENST00000502781 BAZ1BQ9UIG0 1483 aaKnown RBP46.22■■■■■ 4.99
LSM6-202ENST00000502781 WIZO95785 1651 aa46.16■■■■■ 4.98
LSM6-202ENST00000502781 TOP2AP11388 1531 aaKnown RBP45.74■■■■■ 4.91
LSM6-202ENST00000502781 NESP48681 1621 aa45.32■■■■■ 4.85
LSM6-202ENST00000502781 SUPT5HO00267 1087 aaKnown RBP45.28■■■■■ 4.84
LSM6-202ENST00000502781 LAMC3Q9Y6N6 1575 aa45.25■■■■■ 4.83
LSM6-202ENST00000502781 CADPSQ9ULU8 1353 aa45.24■■■■■ 4.83
LSM6-202ENST00000502781 CCDC88BA6NC98 1476 aa45.21■■■■■ 4.83
LSM6-202ENST00000502781 CFTRP13569 1480 aa45.05■■■■■ 4.8
LSM6-202ENST00000502781 ERCC6Q03468 1493 aa44.97■■■■■ 4.79
LSM6-202ENST00000502781 PDS5BQ9NTI5 1447 aa44.95■■■■■ 4.79
LSM6-202ENST00000502781 KIF21AQ7Z4S6 1674 aa44.72■■■■■ 4.75
LSM6-202ENST00000502781 FANCD2Q9BXW9 1451 aa44.68■■■■■ 4.74
LSM6-202ENST00000502781 PRDM2Q13029 1718 aa44.58■■■■■ 4.73
LSM6-202ENST00000502781 CEP164Q9UPV0 1460 aa44.58■■■■■ 4.73
LSM6-202ENST00000502781 THOC2Q8NI27 1593 aaKnown RBP44.56■■■■■ 4.72
LSM6-202ENST00000502781 MRC2Q9UBG0 1479 aa44.47■■■■■ 4.71
LSM6-202ENST00000502781 CUX2O14529 1486 aa44.45■■■■■ 4.71
LSM6-202ENST00000502781 WDR62O43379 1518 aa44.32■■■■■ 4.69
LSM6-202ENST00000502781 URB2Q14146 1524 aaKnown RBP44.23■■■■■ 4.67
LSM6-202ENST00000502781 ABCC8Q09428 1581 aa44.03■■■■■ 4.64
LSM6-202ENST00000502781 TOPBP1Q92547 1522 aa44■■■■■ 4.63
LSM6-202ENST00000502781 DNMBPQ6XZF7 1577 aa43.97■■■■■ 4.63
LSM6-202ENST00000502781 CUX1P39880 1505 aa43.8■■■■■ 4.6
LSM6-202ENST00000502781 POLA1P09884 1462 aaPredicted RBP43.67■■■■■ 4.58
LSM6-202ENST00000502781 IFT140Q96RY7 1462 aa43.66■■■■■ 4.58
LSM6-202ENST00000502781 WRNQ14191 1432 aaPredicted RBP eCLIP43.63■■■■■ 4.58
LSM6-202ENST00000502781 FGD5Q6ZNL6 1462 aa43.59■■■■■ 4.57
LSM6-202ENST00000502781 TARBP1Q13395 1621 aaKnown RBP43.5■■■■■ 4.55
LSM6-202ENST00000502781 TOP2BQ02880 1626 aa43.49■■■■■ 4.55
LSM6-202ENST00000502781 SYNJ1O43426 1573 aa43.49■■■■■ 4.55
LSM6-202ENST00000502781 SOGA1O94964 1423 aa43.47■■■■■ 4.55
LSM6-202ENST00000502781 BIVM-ERCC5R4GMW8 1640 aa43.46■■■■■ 4.55
LSM6-202ENST00000502781 RAD54L2Q9Y4B4 1467 aa43.45■■■■■ 4.55
LSM6-202ENST00000502781 ZNF608Q9ULD9 1512 aaPredicted RBP43.43■■■■■ 4.54
LSM6-202ENST00000502781 EIF4G3O43432 1585 aaKnown RBP43.23■■■■■ 4.51
LSM6-202ENST00000502781 AQRO60306 1485 aaKnown RBP eCLIP43.23■■■■■ 4.51
LSM6-202ENST00000502781 ABCA10Q8WWZ4 1543 aa43.21■■■■■ 4.51
LSM6-202ENST00000502781 TDRD9Q8NDG6 1382 aaKnown RBP43.2■■■■■ 4.51
LSM6-202ENST00000502781 WDR97A6NE52 1622 aa43.19■■■■■ 4.5
LSM6-202ENST00000502781 GAPVD1Q14C86 1478 aa42.98■■■■■ 4.47
LSM6-202ENST00000502781 ABCA5Q8WWZ7 1642 aa42.98■■■■■ 4.47
LSM6-202ENST00000502781 GRIN2BQ13224 1484 aa42.94■■■■■ 4.46
LSM6-202ENST00000502781 SNAPC4Q5SXM2 1469 aa42.81■■■■■ 4.44
LSM6-202ENST00000502781 MAGI1Q96QZ7 1491 aaPredicted RBP42.79■■■■■ 4.44
LSM6-202ENST00000502781 PBRM1Q86U86 1689 aa42.78■■■■■ 4.44
LSM6-202ENST00000502781 TRIM41Q8WV44 630 aa42.78■■■■■ 4.44
LSM6-202ENST00000502781 DNAJC5Q9H3Z4 198 aa42.75■■■■■ 4.43
LSM6-202ENST00000502781 KIF27Q86VH2 1401 aa42.69■■■■■ 4.42
LSM6-202ENST00000502781 ERICH3Q5RHP9 1530 aa42.69■■■■■ 4.42
LSM6-202ENST00000502781 OSCARQ8IYS5 282 aa42.66■■■■■ 4.42
LSM6-202ENST00000502781 SYNJ2O15056 1496 aa42.63■■■■■ 4.41
LSM6-202ENST00000502781 CHD1O14646 1710 aa42.58■■■■■ 4.41
LSM6-202ENST00000502781 FBLN2P98095 1184 aa42.56■■■■■ 4.4
LSM6-202ENST00000502781 CHMP7Q8WUX9 453 aaPredicted RBP42.54■■■■■ 4.4
LSM6-202ENST00000502781 ADAMTS12P58397 1594 aa42.53■■■■■ 4.4
LSM6-202ENST00000502781 IGF1RP08069 1367 aa42.53■■■■■ 4.4
LSM6-202ENST00000502781 CHIC1Q5VXU3 224 aa42.52■■■■■ 4.4
LSM6-202ENST00000502781 FHAD1B1AJZ9 1412 aa42.51■■■■■ 4.4
LSM6-202ENST00000502781 RUSC2Q8N2Y8 1516 aa42.4■■■■■ 4.38
LSM6-202ENST00000502781 GRIN2AQ12879 1464 aa42.39■■■■■ 4.38
LSM6-202ENST00000502781 CUL7Q14999 1698 aa42.3■■■■■ 4.36
LSM6-202ENST00000502781 CARMIL1Q5VZK9 1371 aa42.24■■■■■ 4.35
LSM6-202ENST00000502781 NUP160Q12769 1436 aa42.23■■■■■ 4.35
LSM6-202ENST00000502781 CLASP1Q7Z460 1538 aa42.22■■■■■ 4.35
LSM6-202ENST00000502781 CEP170Q5SW79 1584 aa42.15■■■■■ 4.34
LSM6-202ENST00000502781 EEA1Q15075 1411 aa42.1■■■■■ 4.33
LSM6-202ENST00000502781 RAPGEF2Q9Y4G8 1499 aa42.02■■■■■ 4.32
LSM6-202ENST00000502781 PRXQ9BXM0 1461 aa42■■■■■ 4.31
LSM6-202ENST00000502781 CSRNP3Q8WYN3 585 aa42■■■■■ 4.31
LSM6-202ENST00000502781 ARHGEF11O15085 1522 aa41.96■■■■■ 4.31
LSM6-202ENST00000502781 KIAA0586Q9BVV6 1533 aa41.89■■■■■ 4.3
LSM6-202ENST00000502781 RIMBP3CA6NJZ7 1639 aa41.89■■■■■ 4.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms