RNA–Protein interactions for RNA: YLR268W

SEC22, Transcript of R-SNARE protein, yeastyeast

Gene SEC22, Length 645 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC22YLR268W TY1A-NL2Q12470 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-GR2Q12485 440 aa7.14□□□□□ -1.27
SEC22YLR268W VPS70P47161 811 aa7.13□□□□□ -1.27
SEC22YLR268W SEC2P17065 759 aa7.12□□□□□ -1.27
SEC22YLR268W GCD11P32481 527 aaKnown RBP7.12□□□□□ -1.27
SEC22YLR268W CST6P40535 587 aa7.12□□□□□ -1.27
SEC22YLR268W SPT16P32558 1035 aaKnown RBP7.11□□□□□ -1.27
SEC22YLR268W LAM6Q08001 693 aa7.11□□□□□ -1.27
SEC22YLR268W BRE2P43132 505 aa7.1□□□□□ -1.27
SEC22YLR268W RGR1P19263 1082 aa7.09□□□□□ -1.27
SEC22YLR268W AIR1P40507 360 aaKnown RBP7.08□□□□□ -1.28
SEC22YLR268W GCR2Q01722 534 aa7.08□□□□□ -1.28
SEC22YLR268W YPR109WQ06104 294 aa7.08□□□□□ -1.28
SEC22YLR268W YPL062WQ02781 134 aa7.07□□□□□ -1.28
SEC22YLR268W PAT1P25644 796 aaKnown RBP7.06□□□□□ -1.28
SEC22YLR268W CLA4P48562 842 aa7.06□□□□□ -1.28
SEC22YLR268W CDC4P07834 779 aa7.04□□□□□ -1.28
SEC22YLR268W RRN7P40992 514 aa7.04□□□□□ -1.28
SEC22YLR268W BDP1P46678 594 aa7.02□□□□□ -1.29
SEC22YLR268W FRK1Q03002 865 aaPredicted RBP7.02□□□□□ -1.29
SEC22YLR268W CKB1P43639 278 aa7□□□□□ -1.29
SEC22YLR268W HED1Q03937 162 aa7□□□□□ -1.29
SEC22YLR268W PSE1P32337 1089 aaKnown RBP6.99□□□□□ -1.29
SEC22YLR268W KEX2P13134 814 aa6.97□□□□□ -1.29
SEC22YLR268W CLB5P30283 435 aa6.97□□□□□ -1.29
SEC22YLR268W PBS2P08018 668 aa6.96□□□□□ -1.3
SEC22YLR268W ERF2Q06551 359 aa6.95□□□□□ -1.3
SEC22YLR268W MOD5P07884 428 aa6.94□□□□□ -1.3
SEC22YLR268W GAR1P28007 205 aaKnown RBP6.94□□□□□ -1.3
SEC22YLR268W GBP2P25555 427 aaKnown RBP RIP-Chip data6.92□□□□□ -1.3not detected
SEC22YLR268W PAC1P39946 494 aaKnown RBP6.92□□□□□ -1.3
SEC22YLR268W RTF1P53064 558 aa6.92□□□□□ -1.3
SEC22YLR268W ENV9Q08651 330 aa6.92□□□□□ -1.3
SEC22YLR268W MET22P32179 357 aa6.91□□□□□ -1.3
SEC22YLR268W AGE1Q04412 482 aa6.91□□□□□ -1.3
SEC22YLR268W MAM3Q12296 706 aa6.89□□□□□ -1.31
SEC22YLR268W TUB4P53378 473 aa6.88□□□□□ -1.31
SEC22YLR268W AFT1P22149 690 aa6.87□□□□□ -1.31
SEC22YLR268W MET32Q12041 191 aa6.87□□□□□ -1.31
SEC22YLR268W YNL115CP53925 644 aa6.86□□□□□ -1.31
SEC22YLR268W SIT4P20604 311 aa6.85□□□□□ -1.31
SEC22YLR268W ASH1P34233 588 aa6.85□□□□□ -1.31
SEC22YLR268W DSF2P38213 736 aa6.85□□□□□ -1.31
SEC22YLR268W YDR444WQ04093 687 aa6.85□□□□□ -1.31
SEC22YLR268W TPD3P31383 635 aa6.83□□□□□ -1.32
SEC22YLR268W HST3P53687 447 aa6.83□□□□□ -1.32
SEC22YLR268W IES2P40154 320 aa6.82□□□□□ -1.32
SEC22YLR268W LCB5Q06147 687 aaKnown RBP6.82□□□□□ -1.32
SEC22YLR268W PUS5Q06244 254 aa6.81□□□□□ -1.32
SEC22YLR268W SAS10Q12136 610 aaPredicted RBP6.81□□□□□ -1.32
SEC22YLR268W TEA1P47988 759 aa6.8□□□□□ -1.32
SEC22YLR268W NUP42P49686 430 aaKnown RBP6.79□□□□□ -1.32
SEC22YLR268W KXD1P53158 218 aa6.79□□□□□ -1.32
SEC22YLR268W RRD1P40454 393 aaKnown RBP6.77□□□□□ -1.33
SEC22YLR268W NIS1P53939 407 aa6.77□□□□□ -1.33
SEC22YLR268W HXT10P43581 546 aa6.76□□□□□ -1.33
SEC22YLR268W YJR115WP47152 169 aa6.75□□□□□ -1.33
SEC22YLR268W MSB3P48566 633 aaPredicted RBP6.75□□□□□ -1.33
SEC22YLR268W YDL176WQ12027 708 aa6.75□□□□□ -1.33
SEC22YLR268W SYH1Q02875 849 aaKnown RBP6.74□□□□□ -1.33
SEC22YLR268W PDC1P06169 563 aaKnown RBP6.73□□□□□ -1.33
SEC22YLR268W SLY41P22215 453 aa6.7□□□□□ -1.34
SEC22YLR268W RPA14P50106 137 aa6.69□□□□□ -1.34
SEC22YLR268W FPK1P53739 893 aa6.69□□□□□ -1.34
SEC22YLR268W DIT2P21595 489 aa6.68□□□□□ -1.34
SEC22YLR268W YMR196WQ04336 1088 aa6.68□□□□□ -1.34
SEC22YLR268W PUS6P53294 404 aa6.67□□□□□ -1.34
SEC22YLR268W YPR097WQ06839 1073 aa6.67□□□□□ -1.34
SEC22YLR268W ALR1Q08269 859 aa6.67□□□□□ -1.34
SEC22YLR268W UGA3P26370 528 aa6.66□□□□□ -1.34
SEC22YLR268W RTT106P40161 455 aa6.66□□□□□ -1.34
SEC22YLR268W SPB4P25808 606 aaPredicted RBP6.65□□□□□ -1.34
SEC22YLR268W TBF1Q02457 562 aa6.65□□□□□ -1.34
SEC22YLR268W MRT4P33201 236 aaKnown RBP6.64□□□□□ -1.35
SEC22YLR268W ACO2P39533 789 aa6.64□□□□□ -1.35
SEC22YLR268W BUB1P41695 1021 aaKnown RBP RIP-Chip data6.64□□□□□ -1.35not detected
SEC22YLR268W YDL206WQ12424 762 aa6.64□□□□□ -1.35
SEC22YLR268W PTK2P47116 818 aaKnown RBP6.63□□□□□ -1.35
SEC22YLR268W HST2P53686 357 aa6.63□□□□□ -1.35
SEC22YLR268W KIP2P28743 706 aa6.62□□□□□ -1.35
SEC22YLR268W DMA1P38823 416 aa6.62□□□□□ -1.35
SEC22YLR268W YLR346CQ06139 101 aa6.62□□□□□ -1.35
SEC22YLR268W OPT2Q06593 877 aa6.61□□□□□ -1.35
SEC22YLR268W SRF1Q12516 437 aa6.61□□□□□ -1.35
SEC22YLR268W TRM1P15565 570 aaKnown RBP6.6□□□□□ -1.35
SEC22YLR268W IXR1P33417 597 aa6.6□□□□□ -1.35
SEC22YLR268W NUP85P46673 744 aa6.59□□□□□ -1.35
SEC22YLR268W CAF120P53836 1060 aa6.59□□□□□ -1.35
SEC22YLR268W GLY1P37303 387 aaKnown RBP6.58□□□□□ -1.36
SEC22YLR268W MMP1Q12372 583 aa6.57□□□□□ -1.36
SEC22YLR268W SCJ1P25303 377 aa6.56□□□□□ -1.36
SEC22YLR268W GLN1P32288 370 aaKnown RBP6.55□□□□□ -1.36
SEC22YLR268W TYW1Q08960 810 aaKnown RBP6.55□□□□□ -1.36
SEC22YLR268W MIP1P15801 1254 aa6.52□□□□□ -1.37
SEC22YLR268W VAC17P25591 423 aa6.52□□□□□ -1.37
SEC22YLR268W SCW11P53189 542 aa6.52□□□□□ -1.37
SEC22YLR268W ATF2P53296 535 aa6.52□□□□□ -1.37
SEC22YLR268W TY1A-BLQ12266 440 aa6.51□□□□□ -1.37
SEC22YLR268W ARG82P07250 355 aa6.5□□□□□ -1.37
SEC22YLR268W TRK2P28584 889 aa6.5□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms