RNA–Protein interactions for RNA: YLR268W

SEC22, Transcript of R-SNARE protein, yeastyeast

Gene SEC22, Length 645 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC22YLR268W MTC1P47018 478 aaKnown RBP13.96□□□□□ -0.17
SEC22YLR268W FAP1P53971 965 aa12.93□□□□□ -0.34
SEC22YLR268W DRS1P32892 752 aaKnown RBP12.58□□□□□ -0.4
SEC22YLR268W PRY3P47033 881 aa12.17□□□□□ -0.46
SEC22YLR268W PRI1P10363 409 aa11.98□□□□□ -0.49
SEC22YLR268W AAD16Q02895 342 aa11.95□□□□□ -0.5
SEC22YLR268W ISW2Q08773 1120 aa11.66□□□□□ -0.54
SEC22YLR268W RPG1P38249 964 aaKnown RBP11.5□□□□□ -0.57
SEC22YLR268W YCK3P39962 524 aa11.5□□□□□ -0.57
SEC22YLR268W HAA1Q12753 694 aaKnown RBP11.47□□□□□ -0.57
SEC22YLR268W TSR3Q12094 313 aaKnown RBP11.24□□□□□ -0.61
SEC22YLR268W DIP2Q12220 943 aaPredicted RBP11.18□□□□□ -0.62
SEC22YLR268W RSE1Q04693 1361 aaKnown RBP10.95□□□□□ -0.66
SEC22YLR268W MRPL32P25348 183 aa10.86□□□□□ -0.67
SEC22YLR268W AVT3P36062 692 aa10.69□□□□□ -0.7
SEC22YLR268W RPL17AP05740 184 aaKnown RBP10.6□□□□□ -0.71
SEC22YLR268W REB1P21538 810 aa10.6□□□□□ -0.71
SEC22YLR268W RPL17BP46990 184 aaKnown RBP10.6□□□□□ -0.71
SEC22YLR268W YGL015CP33199 130 aa10.55□□□□□ -0.72
SEC22YLR268W BFR2Q06631 534 aaKnown RBP10.27□□□□□ -0.77
SEC22YLR268W CDC27P38042 758 aa10.22□□□□□ -0.77
SEC22YLR268W SPT21P35209 758 aa10.15□□□□□ -0.78
SEC22YLR268W YKR023WP36119 530 aaKnown RBP10.1□□□□□ -0.79
SEC22YLR268W UBP10P53874 792 aaPredicted RBP10.07□□□□□ -0.8
SEC22YLR268W MAP2P38174 421 aaKnown RBP9.95□□□□□ -0.82
SEC22YLR268W TFC8Q12308 588 aa9.92□□□□□ -0.82
SEC22YLR268W HOP09932 586 aa9.85□□□□□ -0.83
SEC22YLR268W BUD31P25337 157 aaPredicted RBP9.85□□□□□ -0.83
SEC22YLR268W DCD1P06773 312 aa9.8□□□□□ -0.84
SEC22YLR268W RIM101P33400 625 aa9.72□□□□□ -0.85
SEC22YLR268W SCY1P53009 804 aa9.67□□□□□ -0.86
SEC22YLR268W TIF4632P39936 914 aaKnown RBP9.63□□□□□ -0.87
SEC22YLR268W SLX5P32828 619 aaKnown RBP9.61□□□□□ -0.87
SEC22YLR268W TGL3P40308 642 aa9.61□□□□□ -0.87
SEC22YLR268W BCH2P36122 765 aa9.55□□□□□ -0.88
SEC22YLR268W UBP9P39967 754 aa9.44□□□□□ -0.9
SEC22YLR268W OXP1P28273 1286 aa9.34□□□□□ -0.91
SEC22YLR268W SIS1P25294 352 aaKnown RBP9.3□□□□□ -0.92
SEC22YLR268W EPS1P40557 701 aa9.3□□□□□ -0.92
SEC22YLR268W BDF1P35817 686 aa9.27□□□□□ -0.93
SEC22YLR268W YIL055CP40523 627 aaKnown RBP9.21□□□□□ -0.94
SEC22YLR268W PTP3P40048 928 aa9.19□□□□□ -0.94
SEC22YLR268W MST1P07236 462 aa9.18□□□□□ -0.94
SEC22YLR268W NSR1P27476 414 aaKnown RBP RIP-Chip data9.13□□□□□ -0.95not detected
SEC22YLR268W YOR238WQ08634 303 aa9.1□□□□□ -0.95
SEC22YLR268W BBC1P47068 1157 aa9.09□□□□□ -0.95
SEC22YLR268W RSM7P47150 247 aa9.09□□□□□ -0.95
SEC22YLR268W AI2P03876 854 aa9.03□□□□□ -0.96
SEC22YLR268W YBL029C-AQ3E756 94 aa9.01□□□□□ -0.97
SEC22YLR268W YAP5P40574 245 aa8.98□□□□□ -0.97
SEC22YLR268W TFA1P36100 482 aa8.97□□□□□ -0.97
SEC22YLR268W YAH1Q12184 172 aaKnown RBP8.96□□□□□ -0.98
SEC22YLR268W VNX1P42839 908 aa8.94□□□□□ -0.98
SEC22YLR268W SPP1Q03012 353 aa8.84□□□□□ -0.99
SEC22YLR268W YLR271WQ06152 274 aa8.84□□□□□ -0.99
SEC22YLR268W PSD2P53037 1138 aaKnown RBP8.79□□□□□ -1
SEC22YLR268W WSC3Q12215 556 aa8.79□□□□□ -1
SEC22YLR268W GTT3P39996 337 aa8.78□□□□□ -1
SEC22YLR268W TIF11P38912 153 aaKnown RBP8.77□□□□□ -1.01
SEC22YLR268W FKH1P40466 484 aa8.71□□□□□ -1.02
SEC22YLR268W AIR2Q12476 344 aaKnown RBP8.71□□□□□ -1.02
SEC22YLR268W MRM1P25270 412 aa8.66□□□□□ -1.02
SEC22YLR268W SSP1P38871 571 aa8.66□□□□□ -1.02
SEC22YLR268W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.66□□□□□ -1.02not detected
SEC22YLR268W YJL171CP46992 396 aa8.63□□□□□ -1.03
SEC22YLR268W IOC2Q12072 812 aa8.62□□□□□ -1.03
SEC22YLR268W MSB4Q12317 492 aa8.62□□□□□ -1.03
SEC22YLR268W ULI1P43604 169 aa8.61□□□□□ -1.03
SEC22YLR268W PIB1Q06651 286 aa8.61□□□□□ -1.03
SEC22YLR268W LDB19Q12502 818 aa8.61□□□□□ -1.03
SEC22YLR268W EAP1P36041 632 aaKnown RBP8.57□□□□□ -1.04
SEC22YLR268W YMR1P47147 688 aaKnown RBP RIP-Chip data8.54□□□□□ -1.04not detected
SEC22YLR268W VPS29P38759 282 aa8.51□□□□□ -1.05
SEC22YLR268W MGA2P40578 1113 aa8.51□□□□□ -1.05
SEC22YLR268W YOL036WQ08206 761 aa8.51□□□□□ -1.05
SEC22YLR268W BMT6Q12291 365 aa8.51□□□□□ -1.05
SEC22YLR268W RTG3P38165 486 aa8.5□□□□□ -1.05
SEC22YLR268W CST9Q06032 482 aa8.5□□□□□ -1.05
SEC22YLR268W DBP1P24784 617 aaKnown RBP8.48□□□□□ -1.05
SEC22YLR268W SET4P42948 560 aa8.46□□□□□ -1.06
SEC22YLR268W SAM3Q08986 587 aa8.45□□□□□ -1.06
SEC22YLR268W TRP5P00931 707 aaKnown RBP8.44□□□□□ -1.06
SEC22YLR268W VMA1P17255 1071 aaKnown RBP8.43□□□□□ -1.06
SEC22YLR268W RTG1P32607 177 aa8.43□□□□□ -1.06
SEC22YLR268W STS1P38637 319 aa8.42□□□□□ -1.06
SEC22YLR268W YFR006WP43590 535 aa8.4□□□□□ -1.06
SEC22YLR268W YNL035CP53962 389 aaKnown RBP8.4□□□□□ -1.06
SEC22YLR268W SEC61P32915 480 aa8.39□□□□□ -1.07
SEC22YLR268W NCR1Q12200 1170 aa8.39□□□□□ -1.07
SEC22YLR268W ABP1P15891 592 aaKnown RBP8.34□□□□□ -1.07
SEC22YLR268W RCR1P38212 213 aa8.31□□□□□ -1.08
SEC22YLR268W JIP4Q03361 876 aa8.29□□□□□ -1.08
SEC22YLR268W TFG1P41895 735 aaPredicted RBP8.27□□□□□ -1.09
SEC22YLR268W DAN4P47179 1161 aa8.26□□□□□ -1.09
SEC22YLR268W GYP5Q12344 894 aa8.26□□□□□ -1.09
SEC22YLR268W HTA1P04911 132 aaKnown RBP8.23□□□□□ -1.09
SEC22YLR268W HTA2P04912 132 aa8.23□□□□□ -1.09
SEC22YLR268W YDL129WQ07555 291 aa8.2□□□□□ -1.1
SEC22YLR268W SAP30P38429 201 aa8.18□□□□□ -1.1
SEC22YLR268W DCW1P36091 449 aa8.17□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 7.6 ms