Protein–RNA interactions for Protein: P33417

IXR1, Intrastrand cross-link recognition protein, yeastyeast

Predictions only

Length 597 aa.

Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
IXR1P33417 YML009W-BYML009W-B 477 nt23.43■■□□□ 1.34
IXR1P33417 NOP1YDL014W 984 nt22.97■■□□□ 1.27
IXR1P33417 NSR1YGR159C 1245 nt22.8■■□□□ 1.24
IXR1P33417 YKL036CYKL036C 393 nt21.76■■□□□ 1.07
IXR1P33417 YJL027CYJL027C 417 nt20.41■□□□□ 0.86
IXR1P33417 Q0297Q0297 156 nt20.34■□□□□ 0.85
IXR1P33417 SCS3YGL126W 1143 nt20.12■□□□□ 0.81
IXR1P33417 SRX1YKL086W 384 nt20.12■□□□□ 0.81
IXR1P33417 MDJ1YFL016C 1536 nt19.74■□□□□ 0.75
IXR1P33417 YCR051WYCR051W 669 nt19.12■□□□□ 0.65
IXR1P33417 YOL085CYOL085C 342 nt18.86■□□□□ 0.61
IXR1P33417 PKP1YIL042C 1185 nt18.51■□□□□ 0.55
IXR1P33417 SCJ1YMR214W 1134 nt18.49■□□□□ 0.55
IXR1P33417 RPP1BYDL130W 321 nt18.25■□□□□ 0.51
IXR1P33417 ATS1YAL020C 1002 nt18.15■□□□□ 0.5
IXR1P33417 TRN1tP(UGG)A 72 nt17.87■□□□□ 0.45
IXR1P33417 SUF9tP(UGG)F 72 nt17.87■□□□□ 0.45
IXR1P33417 SUF8tP(UGG)H 72 nt17.87■□□□□ 0.45
IXR1P33417 tP(UGG)LtP(UGG)L 72 nt17.87■□□□□ 0.45
IXR1P33417 SUF7tP(UGG)M 72 nt17.87■□□□□ 0.45
IXR1P33417 tP(UGG)N1tP(UGG)N1 72 nt17.87■□□□□ 0.45
IXR1P33417 tP(UGG)N2tP(UGG)N2 72 nt17.87■□□□□ 0.45
IXR1P33417 tP(UGG)O1tP(UGG)O1 72 nt17.87■□□□□ 0.45
IXR1P33417 SUF11tP(UGG)O2 72 nt17.87■□□□□ 0.45
IXR1P33417 DBP2YNL112W 1641 nt17.73■□□□□ 0.43
IXR1P33417 CCC1YLR220W 969 nt17.69■□□□□ 0.42
IXR1P33417 PET122YER153C 765 nt17.39■□□□□ 0.37
IXR1P33417 SCR1SCR1 522 nt17.29■□□□□ 0.36
IXR1P33417 tP(UGG)O3tP(UGG)O3 72 nt17.09■□□□□ 0.33
IXR1P33417 RRN5YLR141W 1092 nt16.95■□□□□ 0.3
IXR1P33417 RTC3YHR087W 336 nt16.83■□□□□ 0.28
IXR1P33417 PST2YDR032C 597 nt16.74■□□□□ 0.27
IXR1P33417 RSB1YOR049C 1065 nt16.73■□□□□ 0.27
IXR1P33417 RVS167YDR388W 1449 nt16.69■□□□□ 0.26
IXR1P33417 YBR190WYBR190W 312 nt16.65■□□□□ 0.26
IXR1P33417 YER088W-BYER088W-B 147 nt16.62■□□□□ 0.25
IXR1P33417 YDJ1YNL064C 1230 nt16.51■□□□□ 0.23
IXR1P33417 YKL097CYKL097C 411 nt16.32■□□□□ 0.2
IXR1P33417 SHR5YOL110W 714 nt16.29■□□□□ 0.2
IXR1P33417 GAR1YHR089C 618 nt16.07■□□□□ 0.16
IXR1P33417 SHU1YHL006C 453 nt15.93■□□□□ 0.14
IXR1P33417 DEP1YAL013W 1218 nt15.66■□□□□ 0.1
IXR1P33417 YOR139CYOR139C 393 nt15.63■□□□□ 0.09
IXR1P33417 YAL037C-BYAL037C-B 975 nt15.52■□□□□ 0.08
IXR1P33417 TIR1YER011W 765 nt15.5■□□□□ 0.07
IXR1P33417 URN1YPR152C 1398 nt15.49■□□□□ 0.07
IXR1P33417 YNL208WYNL208W 600 nt15.44■□□□□ 0.06
IXR1P33417 RPN10YHR200W 807 nt15.34■□□□□ 0.05
IXR1P33417 NPL3YDR432W 1245 nt15.3■□□□□ 0.04
IXR1P33417 SSA1YAL005C 1929 nt15.23■□□□□ 0.03
IXR1P33417 OPI9YLR338W 858 nt15.16■□□□□ 0.02
IXR1P33417 SRB2YHR041C 633 nt15.14■□□□□ 0.01
IXR1P33417 MNP1YGL068W 585 nt15.01□□□□□ -0.01
IXR1P33417 HOM6YJR139C 1080 nt14.99□□□□□ -0.01
IXR1P33417 tM(CAU)CtM(CAU)C 72 nt14.98□□□□□ -0.01
IXR1P33417 IMT4tM(CAU)E 72 nt14.98□□□□□ -0.01
IXR1P33417 IMT3tM(CAU)J3 72 nt14.98□□□□□ -0.01
IXR1P33417 IMT1tM(CAU)O1 72 nt14.98□□□□□ -0.01
IXR1P33417 IMT2tM(CAU)P 72 nt14.98□□□□□ -0.01
IXR1P33417 YGR021WYGR021W 873 nt14.96□□□□□ -0.01
IXR1P33417 WWM1YFL010C 636 nt14.94□□□□□ -0.02
IXR1P33417 YOL037CYOL037C 354 nt14.93□□□□□ -0.02
IXR1P33417 SAH1YER043C 1350 nt14.93□□□□□ -0.02
IXR1P33417 YJR018WYJR018W 363 nt14.82□□□□□ -0.04
IXR1P33417 PUT4YOR348C 1884 nt14.8□□□□□ -0.04
IXR1P33417 YJR120WYJR120W 351 nt14.77□□□□□ -0.05
IXR1P33417 RKM5YLR137W 1104 nt14.76□□□□□ -0.05
IXR1P33417 Q0182Q0182 405 nt14.7□□□□□ -0.06
IXR1P33417 PUN1YLR414C 792 nt14.7□□□□□ -0.06
IXR1P33417 YFL021C-AYFL021C-A 855 nt14.65□□□□□ -0.06
IXR1P33417 ARE1YCR048W 1833 nt14.64□□□□□ -0.07
IXR1P33417 PUS2YGL063W 1113 nt14.63□□□□□ -0.07
IXR1P33417 SSA3YBL075C 1950 nt14.62□□□□□ -0.07
IXR1P33417 RPP2BYDR382W 333 nt14.62□□□□□ -0.07
IXR1P33417 MOT3YMR070W 1473 nt14.62□□□□□ -0.07
IXR1P33417 YLR281CYLR281C 468 nt14.59□□□□□ -0.07
IXR1P33417 BDH2YAL061W 1254 nt14.47□□□□□ -0.09
IXR1P33417 WHI5YOR083W 888 nt14.45□□□□□ -0.1
IXR1P33417 PTC2YER089C 1395 nt14.45□□□□□ -0.1
IXR1P33417 YHR049C-AYHR049C-A 297 nt14.44□□□□□ -0.1
IXR1P33417 BSC6YOL137W 1494 nt14.39□□□□□ -0.11
IXR1P33417 LSM3YLR438C-A 270 nt14.39□□□□□ -0.11
IXR1P33417 POA1YBR022W 534 nt14.38□□□□□ -0.11
IXR1P33417 YPR011CYPR011C 981 nt14.3□□□□□ -0.12
IXR1P33417 FMP45YDL222C 930 nt14.26□□□□□ -0.13
IXR1P33417 MRPL8YJL063C 717 nt14.21□□□□□ -0.13
IXR1P33417 INM2YDR287W 879 nt14.19□□□□□ -0.14
IXR1P33417 DSK2YMR276W 1122 nt14.19□□□□□ -0.14
IXR1P33417 YLR236CYLR236C 324 nt14.18□□□□□ -0.14
IXR1P33417 YBL100CYBL100C 315 nt14.16□□□□□ -0.14
IXR1P33417 NAB2YGL122C 1578 nt14.15□□□□□ -0.14
IXR1P33417 BUD23YCR047C 828 nt14.14□□□□□ -0.15
IXR1P33417 YCH1YGR203W 447 nt14.14□□□□□ -0.15
IXR1P33417 DAL1YIR027C 1383 nt14.09□□□□□ -0.15
IXR1P33417 IMP2'YIL154C 1041 nt14.08□□□□□ -0.16
IXR1P33417 TRM9YML014W 840 nt14.08□□□□□ -0.16
IXR1P33417 FIS1YIL065C 468 nt14.05□□□□□ -0.16
IXR1P33417 FPR4YLR449W 1179 nt14.05□□□□□ -0.16
IXR1P33417 YLR154C-GYLR154C-G 150 nt14.03□□□□□ -0.16
IXR1P33417 FUN26YAL022C 1554 nt14.03□□□□□ -0.16
Retrieved 100 of 7,029 protein–RNA pairs in 15.1 ms