Protein–RNA interactions for Protein: P25808

SPB4, ATP-dependent rRNA helicase SPB4, yeastyeast

Predicted RBP Predictions only

Length 606 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SPB4P25808 YML009W-BYML009W-B 477 nt23.58■■□□□ 1.37
SPB4P25808 NSR1YGR159C 1245 nt23.12■■□□□ 1.29
SPB4P25808 NOP1YDL014W 984 nt23.04■■□□□ 1.28
SPB4P25808 YKL036CYKL036C 393 nt21.65■■□□□ 1.06
SPB4P25808 MDJ1YFL016C 1536 nt20.51■□□□□ 0.87
SPB4P25808 YJL027CYJL027C 417 nt20.32■□□□□ 0.84
SPB4P25808 Q0297Q0297 156 nt20.27■□□□□ 0.84
SPB4P25808 SRX1YKL086W 384 nt20.12■□□□□ 0.81
SPB4P25808 SCS3YGL126W 1143 nt19.91■□□□□ 0.78
SPB4P25808 YCR051WYCR051W 669 nt19.2■□□□□ 0.66
SPB4P25808 YOL085CYOL085C 342 nt18.76■□□□□ 0.59
SPB4P25808 PKP1YIL042C 1185 nt18.49■□□□□ 0.55
SPB4P25808 RPP1BYDL130W 321 nt18.22■□□□□ 0.51
SPB4P25808 DBP2YNL112W 1641 nt18.21■□□□□ 0.51
SPB4P25808 Q0182Q0182 405 nt18.21■□□□□ 0.51
SPB4P25808 SCJ1YMR214W 1134 nt18.07■□□□□ 0.48
SPB4P25808 TRN1tP(UGG)A 72 nt18.02■□□□□ 0.48
SPB4P25808 SUF9tP(UGG)F 72 nt18.02■□□□□ 0.48
SPB4P25808 SUF8tP(UGG)H 72 nt18.02■□□□□ 0.48
SPB4P25808 tP(UGG)LtP(UGG)L 72 nt18.02■□□□□ 0.48
SPB4P25808 SUF7tP(UGG)M 72 nt18.02■□□□□ 0.48
SPB4P25808 tP(UGG)N1tP(UGG)N1 72 nt18.02■□□□□ 0.48
SPB4P25808 tP(UGG)N2tP(UGG)N2 72 nt18.02■□□□□ 0.48
SPB4P25808 tP(UGG)O1tP(UGG)O1 72 nt18.02■□□□□ 0.48
SPB4P25808 SUF11tP(UGG)O2 72 nt18.02■□□□□ 0.48
SPB4P25808 ATS1YAL020C 1002 nt17.93■□□□□ 0.46
SPB4P25808 MOT3YMR070W 1473 nt17.89■□□□□ 0.45
SPB4P25808 CCC1YLR220W 969 nt17.89■□□□□ 0.45
SPB4P25808 PET122YER153C 765 nt17.38■□□□□ 0.37
SPB4P25808 SCR1SCR1 522 nt17.3■□□□□ 0.36
SPB4P25808 YBR190WYBR190W 312 nt17.29■□□□□ 0.36
SPB4P25808 tP(UGG)O3tP(UGG)O3 72 nt17.14■□□□□ 0.33
SPB4P25808 RVS167YDR388W 1449 nt17.02■□□□□ 0.31
SPB4P25808 RTC3YHR087W 336 nt16.98■□□□□ 0.31
SPB4P25808 RRN5YLR141W 1092 nt16.95■□□□□ 0.3
SPB4P25808 SSA3YBL075C 1950 nt16.77■□□□□ 0.28
SPB4P25808 RSB1YOR049C 1065 nt16.74■□□□□ 0.27
SPB4P25808 YER088W-BYER088W-B 147 nt16.6■□□□□ 0.25
SPB4P25808 YDJ1YNL064C 1230 nt16.54■□□□□ 0.24
SPB4P25808 PST2YDR032C 597 nt16.52■□□□□ 0.24
SPB4P25808 SHR5YOL110W 714 nt16.52■□□□□ 0.24
SPB4P25808 GAR1YHR089C 618 nt16.2■□□□□ 0.18
SPB4P25808 DEP1YAL013W 1218 nt16.11■□□□□ 0.17
SPB4P25808 YKL097CYKL097C 411 nt16.11■□□□□ 0.17
SPB4P25808 URN1YPR152C 1398 nt15.98■□□□□ 0.15
SPB4P25808 NME1NME1 340 nt15.83■□□□□ 0.12
SPB4P25808 SHU1YHL006C 453 nt15.78■□□□□ 0.12
SPB4P25808 YNL208WYNL208W 600 nt15.75■□□□□ 0.11
SPB4P25808 PUT4YOR348C 1884 nt15.69■□□□□ 0.1
SPB4P25808 RPN10YHR200W 807 nt15.67■□□□□ 0.1
SPB4P25808 OPI9YLR338W 858 nt15.66■□□□□ 0.1
SPB4P25808 TIR1YER011W 765 nt15.6■□□□□ 0.09
SPB4P25808 YGR139WYGR139W 339 nt15.6■□□□□ 0.09
SPB4P25808 SAH1YER043C 1350 nt15.59■□□□□ 0.09
SPB4P25808 YAL037C-BYAL037C-B 975 nt15.48■□□□□ 0.07
SPB4P25808 SSA1YAL005C 1929 nt15.43■□□□□ 0.06
SPB4P25808 ARE1YCR048W 1833 nt15.42■□□□□ 0.06
SPB4P25808 YOR139CYOR139C 393 nt15.38■□□□□ 0.05
SPB4P25808 SRB2YHR041C 633 nt15.34■□□□□ 0.05
SPB4P25808 YHR049C-AYHR049C-A 297 nt15.23■□□□□ 0.03
SPB4P25808 YJR018WYJR018W 363 nt15.23■□□□□ 0.03
SPB4P25808 NPL3YDR432W 1245 nt15.18■□□□□ 0.02
SPB4P25808 POA1YBR022W 534 nt15.18■□□□□ 0.02
SPB4P25808 PUN1YLR414C 792 nt15.17■□□□□ 0.02
SPB4P25808 YJR120WYJR120W 351 nt15.16■□□□□ 0.02
SPB4P25808 SPT5YML010W 3192 nt15.1■□□□□ 0.01
SPB4P25808 PTC2YER089C 1395 nt15.04■□□□□ -0
SPB4P25808 WWM1YFL010C 636 nt15.01□□□□□ -0.01
SPB4P25808 MNP1YGL068W 585 nt15□□□□□ -0.01
SPB4P25808 YGR021WYGR021W 873 nt14.98□□□□□ -0.01
SPB4P25808 HOM6YJR139C 1080 nt14.96□□□□□ -0.01
SPB4P25808 RPP2BYDR382W 333 nt14.91□□□□□ -0.02
SPB4P25808 BSC6YOL137W 1494 nt14.89□□□□□ -0.03
SPB4P25808 BUD23YCR047C 828 nt14.89□□□□□ -0.03
SPB4P25808 YOL037CYOL037C 354 nt14.84□□□□□ -0.03
SPB4P25808 SSA4YER103W 1929 nt14.8□□□□□ -0.04
SPB4P25808 tM(CAU)CtM(CAU)C 72 nt14.75□□□□□ -0.05
SPB4P25808 IMT4tM(CAU)E 72 nt14.75□□□□□ -0.05
SPB4P25808 IMT3tM(CAU)J3 72 nt14.75□□□□□ -0.05
SPB4P25808 IMT1tM(CAU)O1 72 nt14.75□□□□□ -0.05
SPB4P25808 IMT2tM(CAU)P 72 nt14.75□□□□□ -0.05
SPB4P25808 RKM5YLR137W 1104 nt14.75□□□□□ -0.05
SPB4P25808 NAB2YGL122C 1578 nt14.74□□□□□ -0.05
SPB4P25808 YFL021C-AYFL021C-A 855 nt14.69□□□□□ -0.06
SPB4P25808 BDH2YAL061W 1254 nt14.69□□□□□ -0.06
SPB4P25808 FIS1YIL065C 468 nt14.66□□□□□ -0.06
SPB4P25808 FPR4YLR449W 1179 nt14.65□□□□□ -0.06
SPB4P25808 DAL1YIR027C 1383 nt14.61□□□□□ -0.07
SPB4P25808 INM2YDR287W 879 nt14.58□□□□□ -0.08
SPB4P25808 YBL100CYBL100C 315 nt14.57□□□□□ -0.08
SPB4P25808 PUS2YGL063W 1113 nt14.54□□□□□ -0.08
SPB4P25808 CSM2YIL132C 642 nt14.53□□□□□ -0.08
SPB4P25808 PHO4YFR034C 939 nt14.52□□□□□ -0.09
SPB4P25808 YLR281CYLR281C 468 nt14.5□□□□□ -0.09
SPB4P25808 LSM3YLR438C-A 270 nt14.49□□□□□ -0.09
SPB4P25808 BDF1YLR399C 2061 nt14.43□□□□□ -0.1
SPB4P25808 WHI5YOR083W 888 nt14.42□□□□□ -0.1
SPB4P25808 FUN26YAL022C 1554 nt14.41□□□□□ -0.1
SPB4P25808 TRM9YML014W 840 nt14.36□□□□□ -0.11
SPB4P25808 CCT6YDR188W 1641 nt14.22□□□□□ -0.13
Retrieved 100 of 7,029 protein–RNA pairs in 12.6 ms