Protein–RNA interactions for Protein: P53836

CAF120, CCR4-NOT transcriptional complex subunit CAF120, yeastyeast

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CAF120P53836 YML009W-BYML009W-B 477 nt20.42■□□□□ 0.86
CAF120P53836 NOP1YDL014W 984 nt20.14■□□□□ 0.81
CAF120P53836 NSR1YGR159C 1245 nt19.79■□□□□ 0.76
CAF120P53836 YKL036CYKL036C 393 nt19.14■□□□□ 0.65
CAF120P53836 YJL027CYJL027C 417 nt17.99■□□□□ 0.47
CAF120P53836 Q0297Q0297 156 nt17.8■□□□□ 0.44
CAF120P53836 SCS3YGL126W 1143 nt17.69■□□□□ 0.42
CAF120P53836 SRX1YKL086W 384 nt17.58■□□□□ 0.4
CAF120P53836 MDJ1YFL016C 1536 nt17.57■□□□□ 0.4
CAF120P53836 YCR051WYCR051W 669 nt16.74■□□□□ 0.27
CAF120P53836 YOL085CYOL085C 342 nt16.55■□□□□ 0.24
CAF120P53836 SCJ1YMR214W 1134 nt16.49■□□□□ 0.23
CAF120P53836 PKP1YIL042C 1185 nt16.21■□□□□ 0.19
CAF120P53836 ATS1YAL020C 1002 nt16.03■□□□□ 0.16
CAF120P53836 RPP1BYDL130W 321 nt15.98■□□□□ 0.15
CAF120P53836 TRN1tP(UGG)A 72 nt15.49■□□□□ 0.07
CAF120P53836 SUF9tP(UGG)F 72 nt15.49■□□□□ 0.07
CAF120P53836 SUF8tP(UGG)H 72 nt15.49■□□□□ 0.07
CAF120P53836 tP(UGG)LtP(UGG)L 72 nt15.49■□□□□ 0.07
CAF120P53836 SUF7tP(UGG)M 72 nt15.49■□□□□ 0.07
CAF120P53836 tP(UGG)N1tP(UGG)N1 72 nt15.49■□□□□ 0.07
CAF120P53836 tP(UGG)N2tP(UGG)N2 72 nt15.49■□□□□ 0.07
CAF120P53836 tP(UGG)O1tP(UGG)O1 72 nt15.49■□□□□ 0.07
CAF120P53836 SUF11tP(UGG)O2 72 nt15.49■□□□□ 0.07
CAF120P53836 DBP2YNL112W 1641 nt15.46■□□□□ 0.07
CAF120P53836 CCC1YLR220W 969 nt15.39■□□□□ 0.05
CAF120P53836 SCR1SCR1 522 nt15.24■□□□□ 0.03
CAF120P53836 PET122YER153C 765 nt15.16■□□□□ 0.02
CAF120P53836 YBR190WYBR190W 312 nt15.06■□□□□ 0
CAF120P53836 RTC3YHR087W 336 nt14.98□□□□□ -0.01
CAF120P53836 tP(UGG)O3tP(UGG)O3 72 nt14.89□□□□□ -0.03
CAF120P53836 RRN5YLR141W 1092 nt14.83□□□□□ -0.04
CAF120P53836 PST2YDR032C 597 nt14.73□□□□□ -0.05
CAF120P53836 RSB1YOR049C 1065 nt14.71□□□□□ -0.05
CAF120P53836 RVS167YDR388W 1449 nt14.58□□□□□ -0.07
CAF120P53836 YER088W-BYER088W-B 147 nt14.52□□□□□ -0.09
CAF120P53836 YKL097CYKL097C 411 nt14.48□□□□□ -0.09
CAF120P53836 YDJ1YNL064C 1230 nt14.4□□□□□ -0.1
CAF120P53836 SHR5YOL110W 714 nt14.13□□□□□ -0.15
CAF120P53836 GAR1YHR089C 618 nt13.99□□□□□ -0.17
CAF120P53836 SHU1YHL006C 453 nt13.97□□□□□ -0.17
CAF120P53836 PUT4YOR348C 1884 nt13.86□□□□□ -0.19
CAF120P53836 SSA3YBL075C 1950 nt13.78□□□□□ -0.2
CAF120P53836 YOR139CYOR139C 393 nt13.75□□□□□ -0.21
CAF120P53836 URN1YPR152C 1398 nt13.69□□□□□ -0.22
CAF120P53836 Q0182Q0182 405 nt13.68□□□□□ -0.22
CAF120P53836 DEP1YAL013W 1218 nt13.65□□□□□ -0.22
CAF120P53836 YAL037C-BYAL037C-B 975 nt13.58□□□□□ -0.24
CAF120P53836 NPL3YDR432W 1245 nt13.55□□□□□ -0.24
CAF120P53836 OPI9YLR338W 858 nt13.54□□□□□ -0.24
CAF120P53836 ARE1YCR048W 1833 nt13.53□□□□□ -0.24
CAF120P53836 SAH1YER043C 1350 nt13.5□□□□□ -0.25
CAF120P53836 RPN10YHR200W 807 nt13.5□□□□□ -0.25
CAF120P53836 TIR1YER011W 765 nt13.48□□□□□ -0.25
CAF120P53836 YNL208WYNL208W 600 nt13.44□□□□□ -0.26
CAF120P53836 POA1YBR022W 534 nt13.39□□□□□ -0.27
CAF120P53836 YHR049C-AYHR049C-A 297 nt13.35□□□□□ -0.27
CAF120P53836 tM(CAU)CtM(CAU)C 72 nt13.2□□□□□ -0.3
CAF120P53836 IMT4tM(CAU)E 72 nt13.2□□□□□ -0.3
CAF120P53836 IMT3tM(CAU)J3 72 nt13.2□□□□□ -0.3
CAF120P53836 IMT1tM(CAU)O1 72 nt13.2□□□□□ -0.3
CAF120P53836 IMT2tM(CAU)P 72 nt13.2□□□□□ -0.3
CAF120P53836 SSA1YAL005C 1929 nt13.17□□□□□ -0.3
CAF120P53836 BSC6YOL137W 1494 nt13.15□□□□□ -0.3
CAF120P53836 PUN1YLR414C 792 nt13.14□□□□□ -0.31
CAF120P53836 YOL037CYOL037C 354 nt13.14□□□□□ -0.31
CAF120P53836 YGR021WYGR021W 873 nt13.12□□□□□ -0.31
CAF120P53836 MNP1YGL068W 585 nt13.08□□□□□ -0.32
CAF120P53836 HOM6YJR139C 1080 nt13.07□□□□□ -0.32
CAF120P53836 MOT3YMR070W 1473 nt13.07□□□□□ -0.32
CAF120P53836 YJR018WYJR018W 363 nt13.05□□□□□ -0.32
CAF120P53836 BUD23YCR047C 828 nt13.02□□□□□ -0.33
CAF120P53836 SRB2YHR041C 633 nt13.01□□□□□ -0.33
CAF120P53836 PTC2YER089C 1395 nt13.01□□□□□ -0.33
CAF120P53836 WWM1YFL010C 636 nt12.98□□□□□ -0.33
CAF120P53836 YGR139WYGR139W 339 nt12.97□□□□□ -0.33
CAF120P53836 PUS2YGL063W 1113 nt12.9□□□□□ -0.34
CAF120P53836 RKM5YLR137W 1104 nt12.88□□□□□ -0.35
CAF120P53836 NAB2YGL122C 1578 nt12.88□□□□□ -0.35
CAF120P53836 YJR120WYJR120W 351 nt12.81□□□□□ -0.36
CAF120P53836 YLR281CYLR281C 468 nt12.8□□□□□ -0.36
CAF120P53836 RPP2BYDR382W 333 nt12.79□□□□□ -0.36
CAF120P53836 YFL021C-AYFL021C-A 855 nt12.77□□□□□ -0.37
CAF120P53836 SPT5YML010W 3192 nt12.73□□□□□ -0.37
CAF120P53836 FIS1YIL065C 468 nt12.68□□□□□ -0.38
CAF120P53836 DAL1YIR027C 1383 nt12.68□□□□□ -0.38
CAF120P53836 WHI5YOR083W 888 nt12.67□□□□□ -0.38
CAF120P53836 MRPL8YJL063C 717 nt12.66□□□□□ -0.38
CAF120P53836 INM2YDR287W 879 nt12.61□□□□□ -0.39
CAF120P53836 FPR4YLR449W 1179 nt12.61□□□□□ -0.39
CAF120P53836 PHO4YFR034C 939 nt12.55□□□□□ -0.4
CAF120P53836 BDH2YAL061W 1254 nt12.55□□□□□ -0.4
CAF120P53836 FMP45YDL222C 930 nt12.54□□□□□ -0.4
CAF120P53836 LSM3YLR438C-A 270 nt12.53□□□□□ -0.4
CAF120P53836 YCH1YGR203W 447 nt12.48□□□□□ -0.41
CAF120P53836 YBL100CYBL100C 315 nt12.47□□□□□ -0.41
CAF120P53836 ADO1YJR105W 1023 nt12.46□□□□□ -0.41
CAF120P53836 DSK2YMR276W 1122 nt12.46□□□□□ -0.41
CAF120P53836 YPR011CYPR011C 981 nt12.44□□□□□ -0.42
CAF120P53836 IMP2'YIL154C 1041 nt12.43□□□□□ -0.42
Retrieved 100 of 7,029 protein–RNA pairs in 13.7 ms