Protein–RNA interactions for Protein: Q9Y5H9

PCDHA2, Protocadherin alpha-2, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA2Q9Y5H9 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC38.28■■■■□ 3.72
PCDHA2Q9Y5H9 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC37.42■■■■□ 3.58
PCDHA2Q9Y5H9 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
PCDHA2Q9Y5H9 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
PCDHA2Q9Y5H9 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
PCDHA2Q9Y5H9 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC36.97■■■■□ 3.51
PCDHA2Q9Y5H9 AL356512.1-201ENST00000607453 1739 ntBASIC36.82■■■■□ 3.49
PCDHA2Q9Y5H9 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC36.79■■■■□ 3.48
PCDHA2Q9Y5H9 HES6-203ENST00000409160 1600 ntTSL 2 BASIC36.42■■■■□ 3.42
PCDHA2Q9Y5H9 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC36.14■■■■□ 3.38
PCDHA2Q9Y5H9 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC36.14■■■■□ 3.38
PCDHA2Q9Y5H9 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC35.9■■■■□ 3.34
PCDHA2Q9Y5H9 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC35.88■■■■□ 3.33
PCDHA2Q9Y5H9 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35.77■■■■□ 3.32
PCDHA2Q9Y5H9 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC35.73■■■■□ 3.31
PCDHA2Q9Y5H9 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC35.72■■■■□ 3.31
PCDHA2Q9Y5H9 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC35.66■■■■□ 3.3
PCDHA2Q9Y5H9 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC35.65■■■■□ 3.3
PCDHA2Q9Y5H9 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC35.42■■■■□ 3.26
PCDHA2Q9Y5H9 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
PCDHA2Q9Y5H9 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC35.21■■■■□ 3.23
PCDHA2Q9Y5H9 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
PCDHA2Q9Y5H9 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC35.06■■■■□ 3.2
PCDHA2Q9Y5H9 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
PCDHA2Q9Y5H9 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.04■■■■□ 3.2
PCDHA2Q9Y5H9 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC34.79■■■■□ 3.16
PCDHA2Q9Y5H9 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
PCDHA2Q9Y5H9 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
PCDHA2Q9Y5H9 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC34.66■■■■□ 3.14
PCDHA2Q9Y5H9 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC34.62■■■■□ 3.13
PCDHA2Q9Y5H9 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
PCDHA2Q9Y5H9 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC34.58■■■■□ 3.13
PCDHA2Q9Y5H9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
PCDHA2Q9Y5H9 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC34.5■■■■□ 3.11
PCDHA2Q9Y5H9 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
PCDHA2Q9Y5H9 INO80B-203ENST00000409917 796 ntTSL 2 BASIC34.47■■■■□ 3.11
PCDHA2Q9Y5H9 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
PCDHA2Q9Y5H9 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC34.39■■■■□ 3.1
PCDHA2Q9Y5H9 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.36■■■■□ 3.09
PCDHA2Q9Y5H9 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC34.3■■■■□ 3.08
PCDHA2Q9Y5H9 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC34.11■■■■□ 3.05
PCDHA2Q9Y5H9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
PCDHA2Q9Y5H9 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.04■■■■□ 3.04
PCDHA2Q9Y5H9 AC015813.7-201ENST00000623294 581 ntBASIC34.04■■■■□ 3.04
PCDHA2Q9Y5H9 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
PCDHA2Q9Y5H9 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
PCDHA2Q9Y5H9 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC33.92■■■■□ 3.02
PCDHA2Q9Y5H9 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC33.9■■■■□ 3.02
PCDHA2Q9Y5H9 AC006077.2-201ENST00000623591 457 ntBASIC33.9■■■■□ 3.02
PCDHA2Q9Y5H9 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
PCDHA2Q9Y5H9 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC33.85■■■■□ 3.01
PCDHA2Q9Y5H9 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.83■■■■□ 3.01
PCDHA2Q9Y5H9 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC33.83■■■■□ 3.01
PCDHA2Q9Y5H9 ZNRF2P1-201ENST00000441407 443 ntBASIC33.81■■■■□ 3
PCDHA2Q9Y5H9 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
PCDHA2Q9Y5H9 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC33.79■■■■□ 3
PCDHA2Q9Y5H9 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
PCDHA2Q9Y5H9 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC33.62■■■□□ 2.97
PCDHA2Q9Y5H9 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC33.54■■■□□ 2.96
PCDHA2Q9Y5H9 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
PCDHA2Q9Y5H9 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
PCDHA2Q9Y5H9 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC33.45■■■□□ 2.94
PCDHA2Q9Y5H9 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
PCDHA2Q9Y5H9 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
PCDHA2Q9Y5H9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
PCDHA2Q9Y5H9 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC33.33■■■□□ 2.93
PCDHA2Q9Y5H9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC33.32■■■□□ 2.92
PCDHA2Q9Y5H9 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC33.16■■■□□ 2.9
PCDHA2Q9Y5H9 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
PCDHA2Q9Y5H9 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
PCDHA2Q9Y5H9 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC33.02■■■□□ 2.88
PCDHA2Q9Y5H9 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC33.01■■■□□ 2.88
PCDHA2Q9Y5H9 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
PCDHA2Q9Y5H9 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.99■■■□□ 2.87
PCDHA2Q9Y5H9 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC32.99■■■□□ 2.87
PCDHA2Q9Y5H9 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
PCDHA2Q9Y5H9 AP002365.1-201ENST00000603448 772 ntBASIC32.98■■■□□ 2.87
PCDHA2Q9Y5H9 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
PCDHA2Q9Y5H9 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC32.94■■■□□ 2.86
PCDHA2Q9Y5H9 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
PCDHA2Q9Y5H9 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
PCDHA2Q9Y5H9 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC32.9■■■□□ 2.86
PCDHA2Q9Y5H9 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
PCDHA2Q9Y5H9 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC32.88■■■□□ 2.85
PCDHA2Q9Y5H9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
PCDHA2Q9Y5H9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC32.82■■■□□ 2.84
PCDHA2Q9Y5H9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC32.81■■■□□ 2.84
PCDHA2Q9Y5H9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC32.8■■■□□ 2.84
PCDHA2Q9Y5H9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
PCDHA2Q9Y5H9 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC32.76■■■□□ 2.83
PCDHA2Q9Y5H9 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.74■■■□□ 2.83
PCDHA2Q9Y5H9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC32.72■■■□□ 2.83
PCDHA2Q9Y5H9 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC32.71■■■□□ 2.83
PCDHA2Q9Y5H9 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
PCDHA2Q9Y5H9 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC32.69■■■□□ 2.82
PCDHA2Q9Y5H9 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
PCDHA2Q9Y5H9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.67■■■□□ 2.82
PCDHA2Q9Y5H9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
PCDHA2Q9Y5H9 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
PCDHA2Q9Y5H9 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms