Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
UBQLN3Q9H347 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
UBQLN3Q9H347 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
UBQLN3Q9H347 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC30.27■■■□□ 2.44
UBQLN3Q9H347 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
UBQLN3Q9H347 AL356512.1-201ENST00000607453 1739 ntBASIC30.22■■■□□ 2.43
UBQLN3Q9H347 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
UBQLN3Q9H347 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC29.99■■■□□ 2.39
UBQLN3Q9H347 HES6-203ENST00000409160 1600 ntTSL 2 BASIC29.75■■■□□ 2.35
UBQLN3Q9H347 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC29.71■■■□□ 2.35
UBQLN3Q9H347 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC29.66■■■□□ 2.34
UBQLN3Q9H347 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.48■■■□□ 2.31
UBQLN3Q9H347 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC29.42■■■□□ 2.3
UBQLN3Q9H347 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC29.17■■■□□ 2.26
UBQLN3Q9H347 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.13■■■□□ 2.25
UBQLN3Q9H347 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC29.07■■■□□ 2.24
UBQLN3Q9H347 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC29.05■■■□□ 2.24
UBQLN3Q9H347 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
UBQLN3Q9H347 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC28.93■■■□□ 2.22
UBQLN3Q9H347 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
UBQLN3Q9H347 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC28.84■■■□□ 2.21
UBQLN3Q9H347 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
UBQLN3Q9H347 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.74■■■□□ 2.19
UBQLN3Q9H347 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC28.65■■■□□ 2.18
UBQLN3Q9H347 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
UBQLN3Q9H347 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
UBQLN3Q9H347 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
UBQLN3Q9H347 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
UBQLN3Q9H347 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.42■■■□□ 2.14
UBQLN3Q9H347 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
UBQLN3Q9H347 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
UBQLN3Q9H347 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
UBQLN3Q9H347 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
UBQLN3Q9H347 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
UBQLN3Q9H347 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
UBQLN3Q9H347 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
UBQLN3Q9H347 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
UBQLN3Q9H347 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
UBQLN3Q9H347 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
UBQLN3Q9H347 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
UBQLN3Q9H347 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
UBQLN3Q9H347 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
UBQLN3Q9H347 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC27.98■■■□□ 2.07
UBQLN3Q9H347 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC27.95■■■□□ 2.07
UBQLN3Q9H347 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC27.95■■■□□ 2.06
UBQLN3Q9H347 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
UBQLN3Q9H347 INO80B-203ENST00000409917 796 ntTSL 2 BASIC27.89■■■□□ 2.06
UBQLN3Q9H347 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC27.85■■■□□ 2.05
UBQLN3Q9H347 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
UBQLN3Q9H347 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
UBQLN3Q9H347 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
UBQLN3Q9H347 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC27.68■■■□□ 2.02
UBQLN3Q9H347 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
UBQLN3Q9H347 AC015813.7-201ENST00000623294 581 ntBASIC27.58■■■□□ 2.01
UBQLN3Q9H347 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2
UBQLN3Q9H347 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
UBQLN3Q9H347 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC27.56■■■□□ 2
UBQLN3Q9H347 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC27.47■■□□□ 1.99
UBQLN3Q9H347 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
UBQLN3Q9H347 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
UBQLN3Q9H347 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
UBQLN3Q9H347 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
UBQLN3Q9H347 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC27.39■■□□□ 1.98
UBQLN3Q9H347 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC27.36■■□□□ 1.97
UBQLN3Q9H347 AC006077.2-201ENST00000623591 457 ntBASIC27.32■■□□□ 1.96
UBQLN3Q9H347 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
UBQLN3Q9H347 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
UBQLN3Q9H347 ZNRF2P1-201ENST00000441407 443 ntBASIC27.22■■□□□ 1.95
UBQLN3Q9H347 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC27.21■■□□□ 1.95
UBQLN3Q9H347 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
UBQLN3Q9H347 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC27.16■■□□□ 1.94
UBQLN3Q9H347 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC27.13■■□□□ 1.93
UBQLN3Q9H347 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
UBQLN3Q9H347 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
UBQLN3Q9H347 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
UBQLN3Q9H347 ILK-212ENST00000532063 1617 ntTSL 2 BASIC27.01■■□□□ 1.92
UBQLN3Q9H347 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
UBQLN3Q9H347 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
UBQLN3Q9H347 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
UBQLN3Q9H347 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
UBQLN3Q9H347 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC26.97■■□□□ 1.91
UBQLN3Q9H347 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
UBQLN3Q9H347 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
UBQLN3Q9H347 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
UBQLN3Q9H347 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
UBQLN3Q9H347 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
UBQLN3Q9H347 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
UBQLN3Q9H347 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
UBQLN3Q9H347 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
UBQLN3Q9H347 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
UBQLN3Q9H347 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
UBQLN3Q9H347 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.71■■□□□ 1.87
UBQLN3Q9H347 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
UBQLN3Q9H347 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
UBQLN3Q9H347 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
UBQLN3Q9H347 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.64■■□□□ 1.86
UBQLN3Q9H347 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
UBQLN3Q9H347 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
UBQLN3Q9H347 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
UBQLN3Q9H347 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC26.58■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 158.1 ms