Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC29.73■■■□□ 2.35
SPG11Q96JI7 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC29.55■■■□□ 2.32
SPG11Q96JI7 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC29.33■■■□□ 2.29
SPG11Q96JI7 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SPG11Q96JI7 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SPG11Q96JI7 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC28.41■■■□□ 2.14
SPG11Q96JI7 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
SPG11Q96JI7 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
SPG11Q96JI7 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SPG11Q96JI7 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC28.22■■■□□ 2.11
SPG11Q96JI7 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SPG11Q96JI7 AL356512.1-201ENST00000607453 1739 ntBASIC28.14■■■□□ 2.09
SPG11Q96JI7 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SPG11Q96JI7 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC28.11■■■□□ 2.09
SPG11Q96JI7 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SPG11Q96JI7 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC27.9■■■□□ 2.06
SPG11Q96JI7 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC27.67■■■□□ 2.02
SPG11Q96JI7 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC27.63■■■□□ 2.01
SPG11Q96JI7 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC27.58■■■□□ 2.01
SPG11Q96JI7 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC27.5■■□□□ 1.99
SPG11Q96JI7 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SPG11Q96JI7 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC27.36■■□□□ 1.97
SPG11Q96JI7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SPG11Q96JI7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SPG11Q96JI7 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
SPG11Q96JI7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SPG11Q96JI7 INO80B-203ENST00000409917 796 ntTSL 2 BASIC27.26■■□□□ 1.95
SPG11Q96JI7 AC006077.2-201ENST00000623591 457 ntBASIC27.21■■□□□ 1.95
SPG11Q96JI7 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
SPG11Q96JI7 ZNRF2P1-201ENST00000441407 443 ntBASIC27.12■■□□□ 1.93
SPG11Q96JI7 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC26.95■■□□□ 1.9
SPG11Q96JI7 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
SPG11Q96JI7 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC26.81■■□□□ 1.88
SPG11Q96JI7 HES6-203ENST00000409160 1600 ntTSL 2 BASIC26.76■■□□□ 1.87
SPG11Q96JI7 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SPG11Q96JI7 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC26.72■■□□□ 1.87
SPG11Q96JI7 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
SPG11Q96JI7 AC015813.7-201ENST00000623294 581 ntBASIC26.69■■□□□ 1.86
SPG11Q96JI7 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC26.55■■□□□ 1.84
SPG11Q96JI7 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SPG11Q96JI7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.48■■□□□ 1.83
SPG11Q96JI7 AP002365.1-201ENST00000603448 772 ntBASIC26.44■■□□□ 1.82
SPG11Q96JI7 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SPG11Q96JI7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.4■■□□□ 1.82
SPG11Q96JI7 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC26.34■■□□□ 1.81
SPG11Q96JI7 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
SPG11Q96JI7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
SPG11Q96JI7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.28■■□□□ 1.8
SPG11Q96JI7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SPG11Q96JI7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.25■■□□□ 1.79
SPG11Q96JI7 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SPG11Q96JI7 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.16■■□□□ 1.78
SPG11Q96JI7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.1■■□□□ 1.77
SPG11Q96JI7 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.1■■□□□ 1.77
SPG11Q96JI7 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SPG11Q96JI7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC26.08■■□□□ 1.77
SPG11Q96JI7 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
SPG11Q96JI7 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.04■■□□□ 1.76
SPG11Q96JI7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
SPG11Q96JI7 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC26.02■■□□□ 1.76
SPG11Q96JI7 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
SPG11Q96JI7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
SPG11Q96JI7 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC25.98■■□□□ 1.75
SPG11Q96JI7 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
SPG11Q96JI7 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
SPG11Q96JI7 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SPG11Q96JI7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
SPG11Q96JI7 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SPG11Q96JI7 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SPG11Q96JI7 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC25.77■■□□□ 1.72
SPG11Q96JI7 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SPG11Q96JI7 DYNLL1-208ENST00000550178 581 ntBASIC25.75■■□□□ 1.71
SPG11Q96JI7 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SPG11Q96JI7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SPG11Q96JI7 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
SPG11Q96JI7 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.7■■□□□ 1.7
SPG11Q96JI7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.68■■□□□ 1.7
SPG11Q96JI7 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
SPG11Q96JI7 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SPG11Q96JI7 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SPG11Q96JI7 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
SPG11Q96JI7 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SPG11Q96JI7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC25.59■■□□□ 1.69
SPG11Q96JI7 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.58■■□□□ 1.69
SPG11Q96JI7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC25.54■■□□□ 1.68
SPG11Q96JI7 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SPG11Q96JI7 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SPG11Q96JI7 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SPG11Q96JI7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SPG11Q96JI7 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
SPG11Q96JI7 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
SPG11Q96JI7 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC25.45■■□□□ 1.67
SPG11Q96JI7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SPG11Q96JI7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SPG11Q96JI7 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SPG11Q96JI7 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.41■■□□□ 1.66
SPG11Q96JI7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.41■■□□□ 1.66
SPG11Q96JI7 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC25.41■■□□□ 1.66
SPG11Q96JI7 RARRES2P7-201ENST00000567349 469 ntBASIC25.39■■□□□ 1.66
SPG11Q96JI7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms