Protein–RNA interactions for Protein: Q8WXH0

SYNE2, Nesprin-2, humanhuman

Known RBP Predictions only

Length 6,885 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2Q8WXH0 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SYNE2Q8WXH0 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
SYNE2Q8WXH0 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC14.69□□□□□ -0.06
SYNE2Q8WXH0 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SYNE2Q8WXH0 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SYNE2Q8WXH0 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SYNE2Q8WXH0 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SYNE2Q8WXH0 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SYNE2Q8WXH0 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SYNE2Q8WXH0 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC14.09□□□□□ -0.15
SYNE2Q8WXH0 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SYNE2Q8WXH0 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC14.04□□□□□ -0.16
SYNE2Q8WXH0 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
SYNE2Q8WXH0 ZNRF2P1-201ENST00000441407 443 ntBASIC13.99□□□□□ -0.17
SYNE2Q8WXH0 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SYNE2Q8WXH0 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SYNE2Q8WXH0 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC13.8□□□□□ -0.2
SYNE2Q8WXH0 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SYNE2Q8WXH0 AC006077.2-201ENST00000623591 457 ntBASIC13.78□□□□□ -0.2
SYNE2Q8WXH0 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SYNE2Q8WXH0 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SYNE2Q8WXH0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SYNE2Q8WXH0 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC13.71□□□□□ -0.22
SYNE2Q8WXH0 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC13.71□□□□□ -0.22
SYNE2Q8WXH0 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SYNE2Q8WXH0 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SYNE2Q8WXH0 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
SYNE2Q8WXH0 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SYNE2Q8WXH0 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SYNE2Q8WXH0 INO80B-203ENST00000409917 796 ntTSL 2 BASIC13.61□□□□□ -0.23
SYNE2Q8WXH0 AP002365.1-201ENST00000603448 772 ntBASIC13.58□□□□□ -0.24
SYNE2Q8WXH0 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SYNE2Q8WXH0 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC13.56□□□□□ -0.24
SYNE2Q8WXH0 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC13.56□□□□□ -0.24
SYNE2Q8WXH0 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SYNE2Q8WXH0 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SYNE2Q8WXH0 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
SYNE2Q8WXH0 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
SYNE2Q8WXH0 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
SYNE2Q8WXH0 RPS2P35-201ENST00000443417 897 ntBASIC13.45□□□□□ -0.26
SYNE2Q8WXH0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SYNE2Q8WXH0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC13.42□□□□□ -0.26
SYNE2Q8WXH0 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
SYNE2Q8WXH0 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SYNE2Q8WXH0 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC13.33□□□□□ -0.28
SYNE2Q8WXH0 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
SYNE2Q8WXH0 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC13.3□□□□□ -0.28
SYNE2Q8WXH0 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SYNE2Q8WXH0 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SYNE2Q8WXH0 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC13.25□□□□□ -0.29
SYNE2Q8WXH0 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC13.25□□□□□ -0.29
SYNE2Q8WXH0 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC13.22□□□□□ -0.29
SYNE2Q8WXH0 AC015813.7-201ENST00000623294 581 ntBASIC13.2□□□□□ -0.3
SYNE2Q8WXH0 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SYNE2Q8WXH0 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SYNE2Q8WXH0 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC13.15□□□□□ -0.3
SYNE2Q8WXH0 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC13.1□□□□□ -0.31
SYNE2Q8WXH0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SYNE2Q8WXH0 AL356512.1-201ENST00000607453 1739 ntBASIC13.08□□□□□ -0.32
SYNE2Q8WXH0 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC13.07□□□□□ -0.32
SYNE2Q8WXH0 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC13.07□□□□□ -0.32
SYNE2Q8WXH0 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC13.04□□□□□ -0.32
SYNE2Q8WXH0 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SYNE2Q8WXH0 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
SYNE2Q8WXH0 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
SYNE2Q8WXH0 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
SYNE2Q8WXH0 HLA-V-202ENST00000446817 847 ntBASIC12.96□□□□□ -0.33
SYNE2Q8WXH0 SUZ12P1-203ENST00000578195 985 ntBASIC12.95□□□□□ -0.34
SYNE2Q8WXH0 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
SYNE2Q8WXH0 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC12.94□□□□□ -0.34
SYNE2Q8WXH0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SYNE2Q8WXH0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
SYNE2Q8WXH0 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SYNE2Q8WXH0 DYNLL1-208ENST00000550178 581 ntBASIC12.92□□□□□ -0.34
SYNE2Q8WXH0 RARRES2P7-201ENST00000567349 469 ntBASIC12.92□□□□□ -0.34
SYNE2Q8WXH0 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
SYNE2Q8WXH0 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC12.91□□□□□ -0.34
SYNE2Q8WXH0 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC12.91□□□□□ -0.34
SYNE2Q8WXH0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
SYNE2Q8WXH0 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SYNE2Q8WXH0 MIR7108-201ENST00000614319 87 ntBASIC12.9□□□□□ -0.34
SYNE2Q8WXH0 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
SYNE2Q8WXH0 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
SYNE2Q8WXH0 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC12.86□□□□□ -0.35
SYNE2Q8WXH0 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
SYNE2Q8WXH0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC12.86□□□□□ -0.35
SYNE2Q8WXH0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC12.86□□□□□ -0.35
SYNE2Q8WXH0 AC097358.2-201ENST00000607541 1159 ntBASIC12.85□□□□□ -0.35
SYNE2Q8WXH0 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC12.85□□□□□ -0.35
SYNE2Q8WXH0 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
SYNE2Q8WXH0 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC12.84□□□□□ -0.35
SYNE2Q8WXH0 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
SYNE2Q8WXH0 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
SYNE2Q8WXH0 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SYNE2Q8WXH0 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SYNE2Q8WXH0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC12.78□□□□□ -0.36
SYNE2Q8WXH0 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SYNE2Q8WXH0 AC136428.2-201ENST00000563187 214 ntBASIC12.77□□□□□ -0.36
SYNE2Q8WXH0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC12.77□□□□□ -0.37
SYNE2Q8WXH0 ABHD17AP4-201ENST00000411545 909 ntBASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms