Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
VPS13DQ5THJ4 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC23.5■■□□□ 1.35
VPS13DQ5THJ4 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
VPS13DQ5THJ4 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VPS13DQ5THJ4 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
VPS13DQ5THJ4 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
VPS13DQ5THJ4 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
VPS13DQ5THJ4 AL356512.1-201ENST00000607453 1739 ntBASIC22.6■■□□□ 1.21
VPS13DQ5THJ4 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
VPS13DQ5THJ4 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC22.41■■□□□ 1.18
VPS13DQ5THJ4 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC22.39■■□□□ 1.17
VPS13DQ5THJ4 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC22.38■■□□□ 1.17
VPS13DQ5THJ4 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
VPS13DQ5THJ4 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
VPS13DQ5THJ4 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
VPS13DQ5THJ4 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS13DQ5THJ4 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
VPS13DQ5THJ4 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
VPS13DQ5THJ4 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS13DQ5THJ4 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
VPS13DQ5THJ4 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
VPS13DQ5THJ4 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS13DQ5THJ4 INO80B-203ENST00000409917 796 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS13DQ5THJ4 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS13DQ5THJ4 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC21.75■■□□□ 1.07
VPS13DQ5THJ4 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS13DQ5THJ4 HES6-203ENST00000409160 1600 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS13DQ5THJ4 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13DQ5THJ4 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13DQ5THJ4 AC006077.2-201ENST00000623591 457 ntBASIC21.59■■□□□ 1.05
VPS13DQ5THJ4 ZNRF2P1-201ENST00000441407 443 ntBASIC21.58■■□□□ 1.05
VPS13DQ5THJ4 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
VPS13DQ5THJ4 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS13DQ5THJ4 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC21.41■■□□□ 1.02
VPS13DQ5THJ4 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC21.39■■□□□ 1.01
VPS13DQ5THJ4 AC015813.7-201ENST00000623294 581 ntBASIC21.35■■□□□ 1.01
VPS13DQ5THJ4 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13DQ5THJ4 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS13DQ5THJ4 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC21.27■■□□□ 1
VPS13DQ5THJ4 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS13DQ5THJ4 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS13DQ5THJ4 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS13DQ5THJ4 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS13DQ5THJ4 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS13DQ5THJ4 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
VPS13DQ5THJ4 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS13DQ5THJ4 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS13DQ5THJ4 AP002365.1-201ENST00000603448 772 ntBASIC20.93■□□□□ 0.94
VPS13DQ5THJ4 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC20.91■□□□□ 0.94
VPS13DQ5THJ4 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS13DQ5THJ4 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS13DQ5THJ4 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS13DQ5THJ4 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS13DQ5THJ4 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13DQ5THJ4 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VPS13DQ5THJ4 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS13DQ5THJ4 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS13DQ5THJ4 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS13DQ5THJ4 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS13DQ5THJ4 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
VPS13DQ5THJ4 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS13DQ5THJ4 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS13DQ5THJ4 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13DQ5THJ4 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13DQ5THJ4 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13DQ5THJ4 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
VPS13DQ5THJ4 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13DQ5THJ4 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13DQ5THJ4 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
VPS13DQ5THJ4 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13DQ5THJ4 DYNLL1-208ENST00000550178 581 ntBASIC20.54■□□□□ 0.88
VPS13DQ5THJ4 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
VPS13DQ5THJ4 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.52■□□□□ 0.87
VPS13DQ5THJ4 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS13DQ5THJ4 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.45■□□□□ 0.86
VPS13DQ5THJ4 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13DQ5THJ4 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13DQ5THJ4 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13DQ5THJ4 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13DQ5THJ4 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13DQ5THJ4 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS13DQ5THJ4 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS13DQ5THJ4 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13DQ5THJ4 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13DQ5THJ4 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS13DQ5THJ4 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13DQ5THJ4 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
VPS13DQ5THJ4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13DQ5THJ4 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS13DQ5THJ4 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
VPS13DQ5THJ4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS13DQ5THJ4 AL031258.1-201ENST00000623562 325 ntBASIC20.28■□□□□ 0.84
VPS13DQ5THJ4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VPS13DQ5THJ4 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC20.27■□□□□ 0.83
VPS13DQ5THJ4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS13DQ5THJ4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS13DQ5THJ4 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS13DQ5THJ4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13DQ5THJ4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
VPS13DQ5THJ4 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms