Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC22.18■■□□□ 1.14
HSPG2P98160 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC22.05■■□□□ 1.12
HSPG2P98160 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
HSPG2P98160 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HSPG2P98160 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HSPG2P98160 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
HSPG2P98160 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC21.28■■□□□ 1
HSPG2P98160 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HSPG2P98160 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
HSPG2P98160 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC21.13■□□□□ 0.97
HSPG2P98160 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
HSPG2P98160 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HSPG2P98160 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HSPG2P98160 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC20.93■□□□□ 0.94
HSPG2P98160 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC20.83■□□□□ 0.93
HSPG2P98160 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HSPG2P98160 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HSPG2P98160 ZNRF2P1-201ENST00000441407 443 ntBASIC20.57■□□□□ 0.88
HSPG2P98160 AL356512.1-201ENST00000607453 1739 ntBASIC20.55■□□□□ 0.88
HSPG2P98160 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HSPG2P98160 AC006077.2-201ENST00000623591 457 ntBASIC20.46■□□□□ 0.87
HSPG2P98160 INO80B-203ENST00000409917 796 ntTSL 2 BASIC20.44■□□□□ 0.86
HSPG2P98160 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HSPG2P98160 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HSPG2P98160 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HSPG2P98160 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HSPG2P98160 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
HSPG2P98160 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
HSPG2P98160 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.36■□□□□ 0.85
HSPG2P98160 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.28■□□□□ 0.84
HSPG2P98160 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HSPG2P98160 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
HSPG2P98160 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HSPG2P98160 AC015813.7-201ENST00000623294 581 ntBASIC19.97■□□□□ 0.79
HSPG2P98160 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
HSPG2P98160 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC19.94■□□□□ 0.78
HSPG2P98160 AP002365.1-201ENST00000603448 772 ntBASIC19.93■□□□□ 0.78
HSPG2P98160 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
HSPG2P98160 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
HSPG2P98160 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
HSPG2P98160 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC19.84■□□□□ 0.77
HSPG2P98160 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HSPG2P98160 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HSPG2P98160 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HSPG2P98160 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HSPG2P98160 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
HSPG2P98160 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HSPG2P98160 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC19.69■□□□□ 0.74
HSPG2P98160 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HSPG2P98160 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC19.65■□□□□ 0.74
HSPG2P98160 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HSPG2P98160 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC19.58■□□□□ 0.73
HSPG2P98160 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC19.55■□□□□ 0.72
HSPG2P98160 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
HSPG2P98160 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HSPG2P98160 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC19.51■□□□□ 0.71
HSPG2P98160 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HSPG2P98160 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HSPG2P98160 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC19.46■□□□□ 0.71
HSPG2P98160 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC19.45■□□□□ 0.7
HSPG2P98160 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
HSPG2P98160 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC19.42■□□□□ 0.7
HSPG2P98160 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC19.41■□□□□ 0.7
HSPG2P98160 HES6-203ENST00000409160 1600 ntTSL 2 BASIC19.41■□□□□ 0.7
HSPG2P98160 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC19.39■□□□□ 0.69
HSPG2P98160 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HSPG2P98160 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HSPG2P98160 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HSPG2P98160 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HSPG2P98160 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HSPG2P98160 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HSPG2P98160 DYNLL1-208ENST00000550178 581 ntBASIC19.32■□□□□ 0.68
HSPG2P98160 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.32■□□□□ 0.68
HSPG2P98160 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC19.28■□□□□ 0.68
HSPG2P98160 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HSPG2P98160 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HSPG2P98160 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC19.27■□□□□ 0.68
HSPG2P98160 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.27■□□□□ 0.68
HSPG2P98160 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HSPG2P98160 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC19.23■□□□□ 0.67
HSPG2P98160 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.23■□□□□ 0.67
HSPG2P98160 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.22■□□□□ 0.67
HSPG2P98160 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HSPG2P98160 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC19.21■□□□□ 0.67
HSPG2P98160 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HSPG2P98160 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HSPG2P98160 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HSPG2P98160 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
HSPG2P98160 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.15■□□□□ 0.66
HSPG2P98160 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC19.14■□□□□ 0.65
HSPG2P98160 RPS2P35-201ENST00000443417 897 ntBASIC19.13■□□□□ 0.65
HSPG2P98160 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HSPG2P98160 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19.1■□□□□ 0.65
HSPG2P98160 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HSPG2P98160 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.08■□□□□ 0.65
HSPG2P98160 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.08■□□□□ 0.65
HSPG2P98160 AC136428.2-201ENST00000563187 214 ntBASIC19.08■□□□□ 0.64
HSPG2P98160 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HSPG2P98160 AL031258.1-201ENST00000623562 325 ntBASIC19.06■□□□□ 0.64
HSPG2P98160 RARRES2P7-201ENST00000567349 469 ntBASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms