Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.58■■■■□ 3.29
SOX9P48436 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35.05■■■■□ 3.2
SOX9P48436 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
SOX9P48436 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.56■■■■□ 3.12
SOX9P48436 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
SOX9P48436 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.26■■■■□ 3.07
SOX9P48436 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
SOX9P48436 AL356512.1-201ENST00000607453 1739 ntBASIC34.01■■■■□ 3.04
SOX9P48436 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.63■■■□□ 2.97
SOX9P48436 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.47■■■□□ 2.95
SOX9P48436 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.4■■■□□ 2.94
SOX9P48436 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.38■■■□□ 2.93
SOX9P48436 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.29■■■□□ 2.92
SOX9P48436 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
SOX9P48436 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.21■■■□□ 2.91
SOX9P48436 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.17■■■□□ 2.9
SOX9P48436 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC33.04■■■□□ 2.88
SOX9P48436 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SOX9P48436 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.8■■■□□ 2.84
SOX9P48436 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
SOX9P48436 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.62■■■□□ 2.81
SOX9P48436 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
SOX9P48436 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
SOX9P48436 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
SOX9P48436 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
SOX9P48436 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.51■■■□□ 2.79
SOX9P48436 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
SOX9P48436 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.44■■■□□ 2.78
SOX9P48436 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.38■■■□□ 2.77
SOX9P48436 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.38■■■□□ 2.77
SOX9P48436 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SOX9P48436 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC32.13■■■□□ 2.73
SOX9P48436 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
SOX9P48436 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.92■■■□□ 2.7
SOX9P48436 ZNRF2P1-201ENST00000441407 443 ntBASIC31.86■■■□□ 2.69
SOX9P48436 AC006077.2-201ENST00000623591 457 ntBASIC31.85■■■□□ 2.69
SOX9P48436 AC015813.7-201ENST00000623294 581 ntBASIC31.82■■■□□ 2.68
SOX9P48436 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.76■■■□□ 2.67
SOX9P48436 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.72■■■□□ 2.67
SOX9P48436 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
SOX9P48436 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SOX9P48436 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SOX9P48436 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SOX9P48436 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.46■■■□□ 2.63
SOX9P48436 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
SOX9P48436 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SOX9P48436 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
SOX9P48436 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SOX9P48436 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.24■■■□□ 2.59
SOX9P48436 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
SOX9P48436 AP002365.1-201ENST00000603448 772 ntBASIC31.1■■■□□ 2.57
SOX9P48436 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.94■■■□□ 2.54
SOX9P48436 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.93■■■□□ 2.54
SOX9P48436 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.92■■■□□ 2.54
SOX9P48436 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
SOX9P48436 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.88■■■□□ 2.53
SOX9P48436 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SOX9P48436 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SOX9P48436 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.85■■■□□ 2.53
SOX9P48436 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SOX9P48436 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
SOX9P48436 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.8■■■□□ 2.52
SOX9P48436 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.8■■■□□ 2.52
SOX9P48436 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.79■■■□□ 2.52
SOX9P48436 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SOX9P48436 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SOX9P48436 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.72■■■□□ 2.51
SOX9P48436 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.71■■■□□ 2.51
SOX9P48436 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SOX9P48436 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SOX9P48436 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.64■■■□□ 2.5
SOX9P48436 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SOX9P48436 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
SOX9P48436 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
SOX9P48436 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
SOX9P48436 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.59■■■□□ 2.49
SOX9P48436 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.59■■■□□ 2.49
SOX9P48436 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.54■■■□□ 2.48
SOX9P48436 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.54■■■□□ 2.48
SOX9P48436 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.53■■■□□ 2.48
SOX9P48436 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
SOX9P48436 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SOX9P48436 DYNLL1-208ENST00000550178 581 ntBASIC30.51■■■□□ 2.47
SOX9P48436 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
SOX9P48436 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.49■■■□□ 2.47
SOX9P48436 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.47■■■□□ 2.47
SOX9P48436 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.47■■■□□ 2.47
SOX9P48436 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SOX9P48436 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
SOX9P48436 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.41■■■□□ 2.46
SOX9P48436 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SOX9P48436 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SOX9P48436 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.33■■■□□ 2.45
SOX9P48436 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SOX9P48436 AL031258.1-201ENST00000623562 325 ntBASIC30.26■■■□□ 2.43
SOX9P48436 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
SOX9P48436 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
SOX9P48436 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
SOX9P48436 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
SOX9P48436 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.15■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms