Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC37.2■■■■□ 3.55
RB1P06400 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC37■■■■□ 3.51
RB1P06400 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC36.48■■■■□ 3.43
RB1P06400 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
RB1P06400 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC35.94■■■■□ 3.34
RB1P06400 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC35.68■■■■□ 3.3
RB1P06400 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
RB1P06400 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC35.41■■■■□ 3.26
RB1P06400 AL356512.1-201ENST00000607453 1739 ntBASIC35.37■■■■□ 3.25
RB1P06400 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC35.24■■■■□ 3.23
RB1P06400 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC35.12■■■■□ 3.21
RB1P06400 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35■■■■□ 3.19
RB1P06400 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC34.98■■■■□ 3.19
RB1P06400 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
RB1P06400 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
RB1P06400 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC34.67■■■■□ 3.14
RB1P06400 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
RB1P06400 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC34.56■■■■□ 3.12
RB1P06400 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC34.54■■■■□ 3.12
RB1P06400 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC34.24■■■■□ 3.07
RB1P06400 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
RB1P06400 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
RB1P06400 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC34.19■■■■□ 3.06
RB1P06400 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
RB1P06400 HES6-203ENST00000409160 1600 ntTSL 2 BASIC34.06■■■■□ 3.04
RB1P06400 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC34.02■■■■□ 3.04
RB1P06400 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
RB1P06400 INO80B-203ENST00000409917 796 ntTSL 2 BASIC33.94■■■■□ 3.02
RB1P06400 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC33.93■■■■□ 3.02
RB1P06400 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
RB1P06400 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.75■■■□□ 2.99
RB1P06400 AC006077.2-201ENST00000623591 457 ntBASIC33.74■■■□□ 2.99
RB1P06400 ZNRF2P1-201ENST00000441407 443 ntBASIC33.72■■■□□ 2.99
RB1P06400 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.63■■■□□ 2.97
RB1P06400 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC33.59■■■□□ 2.97
RB1P06400 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC33.48■■■□□ 2.95
RB1P06400 AC015813.7-201ENST00000623294 581 ntBASIC33.47■■■□□ 2.95
RB1P06400 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
RB1P06400 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
RB1P06400 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC33.27■■■□□ 2.92
RB1P06400 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC33.06■■■□□ 2.88
RB1P06400 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC32.88■■■□□ 2.85
RB1P06400 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
RB1P06400 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
RB1P06400 AP002365.1-201ENST00000603448 772 ntBASIC32.84■■■□□ 2.85
RB1P06400 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
RB1P06400 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
RB1P06400 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
RB1P06400 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC32.68■■■□□ 2.82
RB1P06400 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC32.58■■■□□ 2.81
RB1P06400 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC32.57■■■□□ 2.8
RB1P06400 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC32.57■■■□□ 2.8
RB1P06400 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC32.56■■■□□ 2.8
RB1P06400 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
RB1P06400 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
RB1P06400 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC32.53■■■□□ 2.8
RB1P06400 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.5■■■□□ 2.79
RB1P06400 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
RB1P06400 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
RB1P06400 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC32.43■■■□□ 2.78
RB1P06400 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC32.4■■■□□ 2.78
RB1P06400 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC32.38■■■□□ 2.77
RB1P06400 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC32.37■■■□□ 2.77
RB1P06400 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
RB1P06400 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC32.28■■■□□ 2.76
RB1P06400 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.24■■■□□ 2.75
RB1P06400 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC32.23■■■□□ 2.75
RB1P06400 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
RB1P06400 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.2■■■□□ 2.75
RB1P06400 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
RB1P06400 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.15■■■□□ 2.74
RB1P06400 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.11■■■□□ 2.73
RB1P06400 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
RB1P06400 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.06■■■□□ 2.72
RB1P06400 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
RB1P06400 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
RB1P06400 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC32.03■■■□□ 2.72
RB1P06400 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
RB1P06400 DYNLL1-208ENST00000550178 581 ntBASIC32.02■■■□□ 2.72
RB1P06400 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
RB1P06400 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
RB1P06400 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
RB1P06400 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
RB1P06400 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
RB1P06400 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.92■■■□□ 2.7
RB1P06400 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
RB1P06400 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.89■■■□□ 2.7
RB1P06400 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
RB1P06400 AL031258.1-201ENST00000623562 325 ntBASIC31.79■■■□□ 2.68
RB1P06400 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
RB1P06400 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
RB1P06400 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.71■■■□□ 2.67
RB1P06400 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RB1P06400 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RB1P06400 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
RB1P06400 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.63■■■□□ 2.65
RB1P06400 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.63■■■□□ 2.65
RB1P06400 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.63■■■□□ 2.65
RB1P06400 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.62■■■□□ 2.65
RB1P06400 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.62■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms