Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
ABCA1O95477 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC28.52■■■□□ 2.16
ABCA1O95477 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
ABCA1O95477 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
ABCA1O95477 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
ABCA1O95477 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
ABCA1O95477 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
ABCA1O95477 AL356512.1-201ENST00000607453 1739 ntBASIC27.26■■□□□ 1.95
ABCA1O95477 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
ABCA1O95477 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
ABCA1O95477 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC27.15■■□□□ 1.94
ABCA1O95477 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
ABCA1O95477 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC27.04■■□□□ 1.92
ABCA1O95477 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
ABCA1O95477 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
ABCA1O95477 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC26.87■■□□□ 1.89
ABCA1O95477 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.87
ABCA1O95477 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
ABCA1O95477 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC26.65■■□□□ 1.86
ABCA1O95477 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
ABCA1O95477 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
ABCA1O95477 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
ABCA1O95477 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC26.3■■□□□ 1.8
ABCA1O95477 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
ABCA1O95477 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
ABCA1O95477 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
ABCA1O95477 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
ABCA1O95477 INO80B-203ENST00000409917 796 ntTSL 2 BASIC26.16■■□□□ 1.78
ABCA1O95477 AC006077.2-201ENST00000623591 457 ntBASIC26.07■■□□□ 1.76
ABCA1O95477 HES6-203ENST00000409160 1600 ntTSL 2 BASIC26.07■■□□□ 1.76
ABCA1O95477 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.76
ABCA1O95477 ZNRF2P1-201ENST00000441407 443 ntBASIC26.01■■□□□ 1.75
ABCA1O95477 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC25.97■■□□□ 1.75
ABCA1O95477 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC25.89■■□□□ 1.73
ABCA1O95477 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC25.83■■□□□ 1.73
ABCA1O95477 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC25.83■■□□□ 1.72
ABCA1O95477 AC015813.7-201ENST00000623294 581 ntBASIC25.73■■□□□ 1.71
ABCA1O95477 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
ABCA1O95477 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
ABCA1O95477 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
ABCA1O95477 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC25.49■■□□□ 1.67
ABCA1O95477 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC25.47■■□□□ 1.67
ABCA1O95477 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA1O95477 AP002365.1-201ENST00000603448 772 ntBASIC25.42■■□□□ 1.66
ABCA1O95477 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
ABCA1O95477 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC25.35■■□□□ 1.65
ABCA1O95477 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
ABCA1O95477 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
ABCA1O95477 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC25.21■■□□□ 1.63
ABCA1O95477 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
ABCA1O95477 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
ABCA1O95477 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
ABCA1O95477 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC25.12■■□□□ 1.61
ABCA1O95477 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.12■■□□□ 1.61
ABCA1O95477 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
ABCA1O95477 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC25.11■■□□□ 1.61
ABCA1O95477 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
ABCA1O95477 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
ABCA1O95477 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC25.08■■□□□ 1.61
ABCA1O95477 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.05■■□□□ 1.6
ABCA1O95477 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA1O95477 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
ABCA1O95477 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC25.01■■□□□ 1.59
ABCA1O95477 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC25■■□□□ 1.59
ABCA1O95477 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.99■■□□□ 1.59
ABCA1O95477 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
ABCA1O95477 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC24.98■■□□□ 1.59
ABCA1O95477 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC24.98■■□□□ 1.59
ABCA1O95477 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
ABCA1O95477 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
ABCA1O95477 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
ABCA1O95477 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
ABCA1O95477 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
ABCA1O95477 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
ABCA1O95477 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
ABCA1O95477 DYNLL1-208ENST00000550178 581 ntBASIC24.74■■□□□ 1.55
ABCA1O95477 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC24.74■■□□□ 1.55
ABCA1O95477 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
ABCA1O95477 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
ABCA1O95477 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
ABCA1O95477 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
ABCA1O95477 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
ABCA1O95477 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
ABCA1O95477 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
ABCA1O95477 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24.63■■□□□ 1.53
ABCA1O95477 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
ABCA1O95477 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
ABCA1O95477 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC24.57■■□□□ 1.52
ABCA1O95477 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
ABCA1O95477 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
ABCA1O95477 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.53■■□□□ 1.52
ABCA1O95477 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC24.49■■□□□ 1.51
ABCA1O95477 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC24.47■■□□□ 1.51
ABCA1O95477 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.45■■□□□ 1.5
ABCA1O95477 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
ABCA1O95477 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.44■■□□□ 1.5
ABCA1O95477 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC24.43■■□□□ 1.5
ABCA1O95477 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
ABCA1O95477 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
ABCA1O95477 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC24.42■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms