Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.46■■□□□ 1.51
PTCHD1Q96NR3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCHD1Q96NR3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCHD1Q96NR3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.45■■□□□ 1.5
PTCHD1Q96NR3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
PTCHD1Q96NR3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.44■■□□□ 1.5
PTCHD1Q96NR3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCHD1Q96NR3 AC127502.1-201ENST00000399971 1502 ntBASIC24.44■■□□□ 1.5
PTCHD1Q96NR3 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PTCHD1Q96NR3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.42■■□□□ 1.5
PTCHD1Q96NR3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PTCHD1Q96NR3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
PTCHD1Q96NR3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PTCHD1Q96NR3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC24.41■■□□□ 1.5
PTCHD1Q96NR3 MIR7108-201ENST00000614319 87 ntBASIC24.41■■□□□ 1.5
PTCHD1Q96NR3 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
PTCHD1Q96NR3 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
PTCHD1Q96NR3 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
PTCHD1Q96NR3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PTCHD1Q96NR3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.4■■□□□ 1.5
PTCHD1Q96NR3 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PTCHD1Q96NR3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PTCHD1Q96NR3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
PTCHD1Q96NR3 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
PTCHD1Q96NR3 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PTCHD1Q96NR3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
PTCHD1Q96NR3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
PTCHD1Q96NR3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.39■■□□□ 1.49
PTCHD1Q96NR3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PTCHD1Q96NR3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PTCHD1Q96NR3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.37■■□□□ 1.49
PTCHD1Q96NR3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PTCHD1Q96NR3 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
PTCHD1Q96NR3 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PTCHD1Q96NR3 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PTCHD1Q96NR3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.36■■□□□ 1.49
PTCHD1Q96NR3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.36■■□□□ 1.49
PTCHD1Q96NR3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PTCHD1Q96NR3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PTCHD1Q96NR3 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.35■■□□□ 1.49
PTCHD1Q96NR3 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PTCHD1Q96NR3 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PTCHD1Q96NR3 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCHD1Q96NR3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PTCHD1Q96NR3 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PTCHD1Q96NR3 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC24.34■■□□□ 1.49
PTCHD1Q96NR3 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PTCHD1Q96NR3 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.33■■□□□ 1.49
PTCHD1Q96NR3 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
PTCHD1Q96NR3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.32■■□□□ 1.48
PTCHD1Q96NR3 LINC00273-201ENST00000539813 1452 ntBASIC24.32■■□□□ 1.48
PTCHD1Q96NR3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCHD1Q96NR3 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PTCHD1Q96NR3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.31■■□□□ 1.48
PTCHD1Q96NR3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC24.31■■□□□ 1.48
PTCHD1Q96NR3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.31■■□□□ 1.48
PTCHD1Q96NR3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
PTCHD1Q96NR3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCHD1Q96NR3 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCHD1Q96NR3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.3■■□□□ 1.48
PTCHD1Q96NR3 ABCB10P3-201ENST00000561950 2166 ntBASIC24.3■■□□□ 1.48
PTCHD1Q96NR3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PTCHD1Q96NR3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.3■■□□□ 1.48
PTCHD1Q96NR3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD1Q96NR3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
PTCHD1Q96NR3 LINC01971-201ENST00000617888 1048 ntBASIC24.29■■□□□ 1.48
PTCHD1Q96NR3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
PTCHD1Q96NR3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
PTCHD1Q96NR3 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTCHD1Q96NR3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTCHD1Q96NR3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PTCHD1Q96NR3 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
PTCHD1Q96NR3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.27■■□□□ 1.48
PTCHD1Q96NR3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PTCHD1Q96NR3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.27■■□□□ 1.48
PTCHD1Q96NR3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.27■■□□□ 1.48
PTCHD1Q96NR3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PTCHD1Q96NR3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.27■■□□□ 1.48
PTCHD1Q96NR3 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PTCHD1Q96NR3 AC139426.1-201ENST00000568218 2529 ntBASIC24.25■■□□□ 1.47
PTCHD1Q96NR3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
PTCHD1Q96NR3 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
PTCHD1Q96NR3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
PTCHD1Q96NR3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
PTCHD1Q96NR3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PTCHD1Q96NR3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
PTCHD1Q96NR3 DUX4L11-201ENST00000611504 1267 ntBASIC24.24■■□□□ 1.47
PTCHD1Q96NR3 DUX4L12-201ENST00000614593 1267 ntBASIC24.24■■□□□ 1.47
PTCHD1Q96NR3 DUX4L14-201ENST00000621227 1267 ntBASIC24.24■■□□□ 1.47
PTCHD1Q96NR3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
PTCHD1Q96NR3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCHD1Q96NR3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
PTCHD1Q96NR3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
PTCHD1Q96NR3 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCHD1Q96NR3 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCHD1Q96NR3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PTCHD1Q96NR3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
PTCHD1Q96NR3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
PTCHD1Q96NR3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
PTCHD1Q96NR3 AC135983.2-203ENST00000454486 1613 ntBASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms