Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
CCDC144BQ3MJ40 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC144BQ3MJ40 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC144BQ3MJ40 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC144BQ3MJ40 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.49■■■□□ 2.47
CCDC144BQ3MJ40 AC021231.2-201ENST00000594613 730 ntBASIC30.49■■■□□ 2.47
CCDC144BQ3MJ40 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
CCDC144BQ3MJ40 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
CCDC144BQ3MJ40 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.49■■■□□ 2.47
CCDC144BQ3MJ40 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC144BQ3MJ40 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC144BQ3MJ40 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.47■■■□□ 2.47
CCDC144BQ3MJ40 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC144BQ3MJ40 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC144BQ3MJ40 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CCDC144BQ3MJ40 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.46■■■□□ 2.47
CCDC144BQ3MJ40 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.46■■■□□ 2.47
CCDC144BQ3MJ40 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
CCDC144BQ3MJ40 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
CCDC144BQ3MJ40 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.45■■■□□ 2.47
CCDC144BQ3MJ40 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.47
CCDC144BQ3MJ40 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CCDC144BQ3MJ40 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CCDC144BQ3MJ40 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CCDC144BQ3MJ40 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC144BQ3MJ40 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC144BQ3MJ40 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC144BQ3MJ40 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC144BQ3MJ40 AC120057.4-201ENST00000624722 1615 ntBASIC30.43■■■□□ 2.46
CCDC144BQ3MJ40 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC144BQ3MJ40 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC144BQ3MJ40 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC144BQ3MJ40 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC144BQ3MJ40 MIR6090-201ENST00000622481 60 ntBASIC30.41■■■□□ 2.46
CCDC144BQ3MJ40 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.4■■■□□ 2.46
CCDC144BQ3MJ40 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.4■■■□□ 2.46
CCDC144BQ3MJ40 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC144BQ3MJ40 AC108673.1-201ENST00000510422 1159 ntBASIC30.39■■■□□ 2.46
CCDC144BQ3MJ40 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC144BQ3MJ40 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.39■■■□□ 2.45
CCDC144BQ3MJ40 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC144BQ3MJ40 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC144BQ3MJ40 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC144BQ3MJ40 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC144BQ3MJ40 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC144BQ3MJ40 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC144BQ3MJ40 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC144BQ3MJ40 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC144BQ3MJ40 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC144BQ3MJ40 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.34■■■□□ 2.45
CCDC144BQ3MJ40 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC144BQ3MJ40 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC144BQ3MJ40 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.32■■■□□ 2.44
CCDC144BQ3MJ40 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.32■■■□□ 2.44
CCDC144BQ3MJ40 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
CCDC144BQ3MJ40 AC139426.1-201ENST00000568218 2529 ntBASIC30.31■■■□□ 2.44
CCDC144BQ3MJ40 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC144BQ3MJ40 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC144BQ3MJ40 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC144BQ3MJ40 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.3■■■□□ 2.44
CCDC144BQ3MJ40 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.3■■■□□ 2.44
CCDC144BQ3MJ40 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC144BQ3MJ40 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.29■■■□□ 2.44
CCDC144BQ3MJ40 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.29■■■□□ 2.44
CCDC144BQ3MJ40 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC144BQ3MJ40 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.29■■■□□ 2.44
CCDC144BQ3MJ40 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC144BQ3MJ40 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC144BQ3MJ40 MIR4449-201ENST00000578365 66 ntBASIC30.27■■■□□ 2.44
CCDC144BQ3MJ40 MIR639-201ENST00000384974 98 ntBASIC30.26■■■□□ 2.43
CCDC144BQ3MJ40 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.24■■■□□ 2.43
CCDC144BQ3MJ40 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.24■■■□□ 2.43
CCDC144BQ3MJ40 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC144BQ3MJ40 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC144BQ3MJ40 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.24■■■□□ 2.43
CCDC144BQ3MJ40 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC144BQ3MJ40 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
CCDC144BQ3MJ40 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.23■■■□□ 2.43
CCDC144BQ3MJ40 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.23■■■□□ 2.43
CCDC144BQ3MJ40 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
CCDC144BQ3MJ40 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.22■■■□□ 2.43
CCDC144BQ3MJ40 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC144BQ3MJ40 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC144BQ3MJ40 MIR3648-2-201ENST00000581792 180 ntBASIC30.2■■■□□ 2.43
CCDC144BQ3MJ40 MIR3648-1-201ENST00000615959 180 ntBASIC30.2■■■□□ 2.43
CCDC144BQ3MJ40 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
CCDC144BQ3MJ40 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.42
CCDC144BQ3MJ40 AC016575.1-201ENST00000607026 382 ntBASIC30.19■■■□□ 2.42
CCDC144BQ3MJ40 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.18■■■□□ 2.42
CCDC144BQ3MJ40 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC144BQ3MJ40 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC144BQ3MJ40 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
CCDC144BQ3MJ40 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 DUX4L11-201ENST00000611504 1267 ntBASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 DUX4L12-201ENST00000614593 1267 ntBASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 DUX4L14-201ENST00000621227 1267 ntBASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC144BQ3MJ40 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.15■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 160.5 ms