Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PTCHD3Q3KNS1 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
PTCHD3Q3KNS1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PTCHD3Q3KNS1 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCHD3Q3KNS1 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.02■■□□□ 1.76
PTCHD3Q3KNS1 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
PTCHD3Q3KNS1 ABCB10P1-201ENST00000614297 2181 ntBASIC25.99■■□□□ 1.75
PTCHD3Q3KNS1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PTCHD3Q3KNS1 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PTCHD3Q3KNS1 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PTCHD3Q3KNS1 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
PTCHD3Q3KNS1 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC25.98■■□□□ 1.75
PTCHD3Q3KNS1 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
PTCHD3Q3KNS1 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PTCHD3Q3KNS1 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PTCHD3Q3KNS1 AL162393.1-201ENST00000437852 946 ntBASIC25.97■■□□□ 1.75
PTCHD3Q3KNS1 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.97■■□□□ 1.75
PTCHD3Q3KNS1 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
PTCHD3Q3KNS1 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PTCHD3Q3KNS1 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
PTCHD3Q3KNS1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
PTCHD3Q3KNS1 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.95■■□□□ 1.75
PTCHD3Q3KNS1 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
PTCHD3Q3KNS1 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.95■■□□□ 1.74
PTCHD3Q3KNS1 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
PTCHD3Q3KNS1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PTCHD3Q3KNS1 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.95■■□□□ 1.74
PTCHD3Q3KNS1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC25.94■■□□□ 1.74
PTCHD3Q3KNS1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.94■■□□□ 1.74
PTCHD3Q3KNS1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
PTCHD3Q3KNS1 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
PTCHD3Q3KNS1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PTCHD3Q3KNS1 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.92■■□□□ 1.74
PTCHD3Q3KNS1 AP006261.1-201ENST00000584783 668 ntBASIC25.92■■□□□ 1.74
PTCHD3Q3KNS1 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PTCHD3Q3KNS1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
PTCHD3Q3KNS1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
PTCHD3Q3KNS1 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.9■■□□□ 1.74
PTCHD3Q3KNS1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.9■■□□□ 1.74
PTCHD3Q3KNS1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
PTCHD3Q3KNS1 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.89■■□□□ 1.74
PTCHD3Q3KNS1 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.88■■□□□ 1.73
PTCHD3Q3KNS1 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
PTCHD3Q3KNS1 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
PTCHD3Q3KNS1 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PTCHD3Q3KNS1 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
PTCHD3Q3KNS1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PTCHD3Q3KNS1 ST7-AS1-201ENST00000456775 1889 ntBASIC25.83■■□□□ 1.73
PTCHD3Q3KNS1 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PTCHD3Q3KNS1 AL135925.1-201ENST00000605920 1701 ntBASIC25.83■■□□□ 1.72
PTCHD3Q3KNS1 MIR762-201ENST00000390236 83 ntBASIC25.82■■□□□ 1.72
PTCHD3Q3KNS1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
PTCHD3Q3KNS1 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PTCHD3Q3KNS1 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PTCHD3Q3KNS1 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PTCHD3Q3KNS1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.81■■□□□ 1.72
PTCHD3Q3KNS1 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
PTCHD3Q3KNS1 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PTCHD3Q3KNS1 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
PTCHD3Q3KNS1 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PTCHD3Q3KNS1 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
PTCHD3Q3KNS1 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PTCHD3Q3KNS1 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.79■■□□□ 1.72
PTCHD3Q3KNS1 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PTCHD3Q3KNS1 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.78■■□□□ 1.72
PTCHD3Q3KNS1 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
PTCHD3Q3KNS1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PTCHD3Q3KNS1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.78■■□□□ 1.72
PTCHD3Q3KNS1 MIR3665-201ENST00000578708 105 ntBASIC25.78■■□□□ 1.72
PTCHD3Q3KNS1 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
PTCHD3Q3KNS1 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PTCHD3Q3KNS1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
PTCHD3Q3KNS1 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.77■■□□□ 1.72
PTCHD3Q3KNS1 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.72
PTCHD3Q3KNS1 DUX4L28-201ENST00000623687 678 ntBASIC25.76■■□□□ 1.71
PTCHD3Q3KNS1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
PTCHD3Q3KNS1 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PTCHD3Q3KNS1 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
PTCHD3Q3KNS1 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.74■■□□□ 1.71
PTCHD3Q3KNS1 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
PTCHD3Q3KNS1 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.74■■□□□ 1.71
PTCHD3Q3KNS1 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PTCHD3Q3KNS1 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
PTCHD3Q3KNS1 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PTCHD3Q3KNS1 AC005559.1-201ENST00000589661 871 ntBASIC25.73■■□□□ 1.71
PTCHD3Q3KNS1 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
PTCHD3Q3KNS1 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PTCHD3Q3KNS1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
PTCHD3Q3KNS1 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PTCHD3Q3KNS1 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PTCHD3Q3KNS1 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
PTCHD3Q3KNS1 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
PTCHD3Q3KNS1 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PTCHD3Q3KNS1 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PTCHD3Q3KNS1 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
PTCHD3Q3KNS1 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
PTCHD3Q3KNS1 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
PTCHD3Q3KNS1 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PTCHD3Q3KNS1 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PTCHD3Q3KNS1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.69■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms