Protein–RNA interactions for Protein: A0A0B4J274

TRAV20, T-cell receptor alpha variable 20 (Fragment), humanhuman

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20A0A0B4J274 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV20A0A0B4J274 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAV20A0A0B4J274 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC22.3■■□□□ 1.16
TRAV20A0A0B4J274 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAV20A0A0B4J274 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV20A0A0B4J274 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC22.28■■□□□ 1.16
TRAV20A0A0B4J274 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC22.28■■□□□ 1.16
TRAV20A0A0B4J274 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC22.27■■□□□ 1.16
TRAV20A0A0B4J274 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.26■■□□□ 1.15
TRAV20A0A0B4J274 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAV20A0A0B4J274 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC22.26■■□□□ 1.15
TRAV20A0A0B4J274 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
TRAV20A0A0B4J274 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRAV20A0A0B4J274 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRAV20A0A0B4J274 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRAV20A0A0B4J274 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
TRAV20A0A0B4J274 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC22.24■■□□□ 1.15
TRAV20A0A0B4J274 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV20A0A0B4J274 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV20A0A0B4J274 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRAV20A0A0B4J274 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TRAV20A0A0B4J274 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
TRAV20A0A0B4J274 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TRAV20A0A0B4J274 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TRAV20A0A0B4J274 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
TRAV20A0A0B4J274 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC22.19■■□□□ 1.14
TRAV20A0A0B4J274 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.19■■□□□ 1.14
TRAV20A0A0B4J274 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV20A0A0B4J274 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TRAV20A0A0B4J274 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC22.18■■□□□ 1.14
TRAV20A0A0B4J274 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV20A0A0B4J274 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV20A0A0B4J274 ZNRF2P2-203ENST00000454624 420 ntBASIC22.17■■□□□ 1.14
TRAV20A0A0B4J274 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
TRAV20A0A0B4J274 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TRAV20A0A0B4J274 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC22.15■■□□□ 1.14
TRAV20A0A0B4J274 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
TRAV20A0A0B4J274 DUX4L29-201ENST00000425409 679 ntBASIC22.15■■□□□ 1.14
TRAV20A0A0B4J274 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC22.14■■□□□ 1.14
TRAV20A0A0B4J274 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
TRAV20A0A0B4J274 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV20A0A0B4J274 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV20A0A0B4J274 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.14■■□□□ 1.13
TRAV20A0A0B4J274 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC22.14■■□□□ 1.13
TRAV20A0A0B4J274 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV20A0A0B4J274 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC22.13■■□□□ 1.13
TRAV20A0A0B4J274 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC22.13■■□□□ 1.13
TRAV20A0A0B4J274 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV20A0A0B4J274 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC22.12■■□□□ 1.13
TRAV20A0A0B4J274 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.12■■□□□ 1.13
TRAV20A0A0B4J274 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC22.12■■□□□ 1.13
TRAV20A0A0B4J274 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV20A0A0B4J274 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 AC108673.1-201ENST00000510422 1159 ntBASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRAV20A0A0B4J274 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC22.1■■□□□ 1.13
TRAV20A0A0B4J274 HLA-V-202ENST00000446817 847 ntBASIC22.1■■□□□ 1.13
TRAV20A0A0B4J274 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRAV20A0A0B4J274 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TRAV20A0A0B4J274 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TRAV20A0A0B4J274 CIB2-204ENST00000557846 934 ntTSL 3 BASIC22.09■■□□□ 1.13
TRAV20A0A0B4J274 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.08■■□□□ 1.13
TRAV20A0A0B4J274 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TRAV20A0A0B4J274 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TRAV20A0A0B4J274 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV20A0A0B4J274 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC22.07■■□□□ 1.12
TRAV20A0A0B4J274 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV20A0A0B4J274 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV20A0A0B4J274 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.06■■□□□ 1.12
TRAV20A0A0B4J274 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV20A0A0B4J274 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV20A0A0B4J274 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV20A0A0B4J274 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.05■■□□□ 1.12
TRAV20A0A0B4J274 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC22.05■■□□□ 1.12
TRAV20A0A0B4J274 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAV20A0A0B4J274 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAV20A0A0B4J274 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV20A0A0B4J274 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms