Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHGA9Q9Y5G4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHGA9Q9Y5G4 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
PCDHGA9Q9Y5G4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.43■■□□□ 1.66
PCDHGA9Q9Y5G4 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.43■■□□□ 1.66
PCDHGA9Q9Y5G4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
PCDHGA9Q9Y5G4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDHGA9Q9Y5G4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.42■■□□□ 1.66
PCDHGA9Q9Y5G4 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.42■■□□□ 1.66
PCDHGA9Q9Y5G4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
PCDHGA9Q9Y5G4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
PCDHGA9Q9Y5G4 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHGA9Q9Y5G4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHGA9Q9Y5G4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
PCDHGA9Q9Y5G4 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.65
PCDHGA9Q9Y5G4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHGA9Q9Y5G4 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHGA9Q9Y5G4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.37■■□□□ 1.65
PCDHGA9Q9Y5G4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHGA9Q9Y5G4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
PCDHGA9Q9Y5G4 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHGA9Q9Y5G4 ST7-202ENST00000323984 2142 ntTSL 5 BASIC25.34■■□□□ 1.65
PCDHGA9Q9Y5G4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
PCDHGA9Q9Y5G4 ST7-207ENST00000393449 2127 ntTSL 5 BASIC25.34■■□□□ 1.65
PCDHGA9Q9Y5G4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.34■■□□□ 1.65
PCDHGA9Q9Y5G4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.34■■□□□ 1.65
PCDHGA9Q9Y5G4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.33■■□□□ 1.65
PCDHGA9Q9Y5G4 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHGA9Q9Y5G4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHGA9Q9Y5G4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
PCDHGA9Q9Y5G4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
PCDHGA9Q9Y5G4 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHGA9Q9Y5G4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHGA9Q9Y5G4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHGA9Q9Y5G4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHGA9Q9Y5G4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.29■■□□□ 1.64
PCDHGA9Q9Y5G4 WASH5P-204ENST00000632292 975 ntBASIC25.29■■□□□ 1.64
PCDHGA9Q9Y5G4 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA9Q9Y5G4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA9Q9Y5G4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.27■■□□□ 1.64
PCDHGA9Q9Y5G4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.27■■□□□ 1.64
PCDHGA9Q9Y5G4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA9Q9Y5G4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.26■■□□□ 1.63
PCDHGA9Q9Y5G4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.26■■□□□ 1.63
PCDHGA9Q9Y5G4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA9Q9Y5G4 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHGA9Q9Y5G4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHGA9Q9Y5G4 HLA-V-202ENST00000446817 847 ntBASIC25.24■■□□□ 1.63
PCDHGA9Q9Y5G4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.24■■□□□ 1.63
PCDHGA9Q9Y5G4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHGA9Q9Y5G4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.22■■□□□ 1.63
PCDHGA9Q9Y5G4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.22■■□□□ 1.63
PCDHGA9Q9Y5G4 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC25.21■■□□□ 1.63
PCDHGA9Q9Y5G4 ZNRF2P2-203ENST00000454624 420 ntBASIC25.21■■□□□ 1.63
PCDHGA9Q9Y5G4 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA9Q9Y5G4 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
PCDHGA9Q9Y5G4 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC25.19■■□□□ 1.62
PCDHGA9Q9Y5G4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHGA9Q9Y5G4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHGA9Q9Y5G4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.17■■□□□ 1.62
PCDHGA9Q9Y5G4 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHGA9Q9Y5G4 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHGA9Q9Y5G4 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA9Q9Y5G4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA9Q9Y5G4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHGA9Q9Y5G4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHGA9Q9Y5G4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA9Q9Y5G4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.12■■□□□ 1.61
PCDHGA9Q9Y5G4 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHGA9Q9Y5G4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHGA9Q9Y5G4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHGA9Q9Y5G4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.09■■□□□ 1.61
PCDHGA9Q9Y5G4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHGA9Q9Y5G4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHGA9Q9Y5G4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.08■■□□□ 1.61
PCDHGA9Q9Y5G4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
PCDHGA9Q9Y5G4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA9Q9Y5G4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA9Q9Y5G4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA9Q9Y5G4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA9Q9Y5G4 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHGA9Q9Y5G4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHGA9Q9Y5G4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.06■■□□□ 1.6
PCDHGA9Q9Y5G4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.06■■□□□ 1.6
PCDHGA9Q9Y5G4 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHGA9Q9Y5G4 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC25.05■■□□□ 1.6
PCDHGA9Q9Y5G4 DUX4L29-201ENST00000425409 679 ntBASIC25.05■■□□□ 1.6
PCDHGA9Q9Y5G4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
PCDHGA9Q9Y5G4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
PCDHGA9Q9Y5G4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC25.04■■□□□ 1.6
PCDHGA9Q9Y5G4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.04■■□□□ 1.6
PCDHGA9Q9Y5G4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHGA9Q9Y5G4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
PCDHGA9Q9Y5G4 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHGA9Q9Y5G4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
PCDHGA9Q9Y5G4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.01■■□□□ 1.59
PCDHGA9Q9Y5G4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHGA9Q9Y5G4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25■■□□□ 1.59
PCDHGA9Q9Y5G4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
PCDHGA9Q9Y5G4 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms