Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
LIME1Q9H400 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.93■■□□□ 1.42
LIME1Q9H400 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
LIME1Q9H400 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
LIME1Q9H400 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.92■■□□□ 1.42
LIME1Q9H400 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
LIME1Q9H400 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
LIME1Q9H400 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.91■■□□□ 1.42
LIME1Q9H400 HLA-V-202ENST00000446817 847 ntBASIC23.89■■□□□ 1.41
LIME1Q9H400 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.89■■□□□ 1.41
LIME1Q9H400 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LIME1Q9H400 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LIME1Q9H400 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC23.87■■□□□ 1.41
LIME1Q9H400 MIR762-201ENST00000390236 83 ntBASIC23.86■■□□□ 1.41
LIME1Q9H400 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LIME1Q9H400 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
LIME1Q9H400 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
LIME1Q9H400 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.85■■□□□ 1.41
LIME1Q9H400 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.84■■□□□ 1.41
LIME1Q9H400 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.84■■□□□ 1.41
LIME1Q9H400 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
LIME1Q9H400 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
LIME1Q9H400 AC044849.2-201ENST00000606596 710 ntBASIC23.83■■□□□ 1.41
LIME1Q9H400 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.82■■□□□ 1.4
LIME1Q9H400 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
LIME1Q9H400 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
LIME1Q9H400 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC23.8■■□□□ 1.4
LIME1Q9H400 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LIME1Q9H400 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LIME1Q9H400 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LIME1Q9H400 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LIME1Q9H400 AC005559.1-201ENST00000589661 871 ntBASIC23.8■■□□□ 1.4
LIME1Q9H400 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.79■■□□□ 1.4
LIME1Q9H400 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LIME1Q9H400 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.77■■□□□ 1.4
LIME1Q9H400 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LIME1Q9H400 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LIME1Q9H400 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LIME1Q9H400 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
LIME1Q9H400 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LIME1Q9H400 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.74■■□□□ 1.39
LIME1Q9H400 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LIME1Q9H400 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC23.73■■□□□ 1.39
LIME1Q9H400 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LIME1Q9H400 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
LIME1Q9H400 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.72■■□□□ 1.39
LIME1Q9H400 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC23.72■■□□□ 1.39
LIME1Q9H400 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
LIME1Q9H400 ZNRF2P2-203ENST00000454624 420 ntBASIC23.71■■□□□ 1.39
LIME1Q9H400 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
LIME1Q9H400 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.7■■□□□ 1.38
LIME1Q9H400 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.69■■□□□ 1.38
LIME1Q9H400 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.69■■□□□ 1.38
LIME1Q9H400 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
LIME1Q9H400 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
LIME1Q9H400 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.68■■□□□ 1.38
LIME1Q9H400 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC23.66■■□□□ 1.38
LIME1Q9H400 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.66■■□□□ 1.38
LIME1Q9H400 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.66■■□□□ 1.38
LIME1Q9H400 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
LIME1Q9H400 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
LIME1Q9H400 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LIME1Q9H400 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.65■■□□□ 1.38
LIME1Q9H400 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
LIME1Q9H400 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
LIME1Q9H400 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.65■■□□□ 1.38
LIME1Q9H400 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.65■■□□□ 1.38
LIME1Q9H400 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
LIME1Q9H400 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.64■■□□□ 1.37
LIME1Q9H400 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
LIME1Q9H400 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC23.62■■□□□ 1.37
LIME1Q9H400 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
LIME1Q9H400 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LIME1Q9H400 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LIME1Q9H400 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LIME1Q9H400 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LIME1Q9H400 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
LIME1Q9H400 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LIME1Q9H400 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
LIME1Q9H400 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LIME1Q9H400 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
LIME1Q9H400 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
LIME1Q9H400 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
LIME1Q9H400 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.57■■□□□ 1.36
LIME1Q9H400 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.57■■□□□ 1.36
LIME1Q9H400 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LIME1Q9H400 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LIME1Q9H400 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LIME1Q9H400 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LIME1Q9H400 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LIME1Q9H400 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
LIME1Q9H400 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.56■■□□□ 1.36
LIME1Q9H400 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.55■■□□□ 1.36
LIME1Q9H400 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC23.55■■□□□ 1.36
LIME1Q9H400 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
LIME1Q9H400 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
LIME1Q9H400 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LIME1Q9H400 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.53■■□□□ 1.36
LIME1Q9H400 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
LIME1Q9H400 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms