Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
UPF3AQ9H1J1 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
UPF3AQ9H1J1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.79■■■□□ 2.52
UPF3AQ9H1J1 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.78■■■□□ 2.52
UPF3AQ9H1J1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
UPF3AQ9H1J1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.78■■■□□ 2.52
UPF3AQ9H1J1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.76■■■□□ 2.51
UPF3AQ9H1J1 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.76■■■□□ 2.51
UPF3AQ9H1J1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.76■■■□□ 2.51
UPF3AQ9H1J1 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
UPF3AQ9H1J1 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
UPF3AQ9H1J1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.75■■■□□ 2.51
UPF3AQ9H1J1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
UPF3AQ9H1J1 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
UPF3AQ9H1J1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.73■■■□□ 2.51
UPF3AQ9H1J1 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
UPF3AQ9H1J1 HLA-V-202ENST00000446817 847 ntBASIC30.71■■■□□ 2.51
UPF3AQ9H1J1 ZNRF2P2-203ENST00000454624 420 ntBASIC30.71■■■□□ 2.51
UPF3AQ9H1J1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.71■■■□□ 2.51
UPF3AQ9H1J1 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.7■■■□□ 2.51
UPF3AQ9H1J1 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
UPF3AQ9H1J1 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
UPF3AQ9H1J1 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
UPF3AQ9H1J1 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
UPF3AQ9H1J1 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
UPF3AQ9H1J1 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
UPF3AQ9H1J1 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
UPF3AQ9H1J1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
UPF3AQ9H1J1 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
UPF3AQ9H1J1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.64■■■□□ 2.5
UPF3AQ9H1J1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.64■■■□□ 2.5
UPF3AQ9H1J1 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
UPF3AQ9H1J1 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
UPF3AQ9H1J1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.61■■■□□ 2.49
UPF3AQ9H1J1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
UPF3AQ9H1J1 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.6■■■□□ 2.49
UPF3AQ9H1J1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
UPF3AQ9H1J1 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
UPF3AQ9H1J1 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
UPF3AQ9H1J1 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
UPF3AQ9H1J1 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.57■■■□□ 2.48
UPF3AQ9H1J1 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.57■■■□□ 2.48
UPF3AQ9H1J1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
UPF3AQ9H1J1 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
UPF3AQ9H1J1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.55■■■□□ 2.48
UPF3AQ9H1J1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.54■■■□□ 2.48
UPF3AQ9H1J1 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
UPF3AQ9H1J1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC30.52■■■□□ 2.48
UPF3AQ9H1J1 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
UPF3AQ9H1J1 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
UPF3AQ9H1J1 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
UPF3AQ9H1J1 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
UPF3AQ9H1J1 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
UPF3AQ9H1J1 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
UPF3AQ9H1J1 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
UPF3AQ9H1J1 DUX4L29-201ENST00000425409 679 ntBASIC30.49■■■□□ 2.47
UPF3AQ9H1J1 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC30.48■■■□□ 2.47
UPF3AQ9H1J1 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
UPF3AQ9H1J1 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
UPF3AQ9H1J1 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
UPF3AQ9H1J1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
UPF3AQ9H1J1 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.47■■■□□ 2.47
UPF3AQ9H1J1 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
UPF3AQ9H1J1 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
UPF3AQ9H1J1 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.45■■■□□ 2.47
UPF3AQ9H1J1 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.44■■■□□ 2.46
UPF3AQ9H1J1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
UPF3AQ9H1J1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
UPF3AQ9H1J1 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
UPF3AQ9H1J1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
UPF3AQ9H1J1 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
UPF3AQ9H1J1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
UPF3AQ9H1J1 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
UPF3AQ9H1J1 AC021231.2-201ENST00000594613 730 ntBASIC30.39■■■□□ 2.46
UPF3AQ9H1J1 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
UPF3AQ9H1J1 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.38■■■□□ 2.45
UPF3AQ9H1J1 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
UPF3AQ9H1J1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
UPF3AQ9H1J1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.36■■■□□ 2.45
UPF3AQ9H1J1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.36■■■□□ 2.45
UPF3AQ9H1J1 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.36■■■□□ 2.45
UPF3AQ9H1J1 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
UPF3AQ9H1J1 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
UPF3AQ9H1J1 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
UPF3AQ9H1J1 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
UPF3AQ9H1J1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
UPF3AQ9H1J1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.31■■■□□ 2.44
UPF3AQ9H1J1 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.31■■■□□ 2.44
UPF3AQ9H1J1 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
UPF3AQ9H1J1 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.3■■■□□ 2.44
UPF3AQ9H1J1 AC108673.1-201ENST00000510422 1159 ntBASIC30.29■■■□□ 2.44
UPF3AQ9H1J1 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.29■■■□□ 2.44
UPF3AQ9H1J1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.29■■■□□ 2.44
UPF3AQ9H1J1 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
UPF3AQ9H1J1 MIR4449-201ENST00000578365 66 ntBASIC30.28■■■□□ 2.44
UPF3AQ9H1J1 MIR6090-201ENST00000622481 60 ntBASIC30.28■■■□□ 2.44
UPF3AQ9H1J1 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
UPF3AQ9H1J1 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
UPF3AQ9H1J1 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.27■■■□□ 2.44
UPF3AQ9H1J1 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms