Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC36.51■■■■□ 3.43
USHBP1Q8N6Y0 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
USHBP1Q8N6Y0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
USHBP1Q8N6Y0 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC36.49■■■■□ 3.43
USHBP1Q8N6Y0 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
USHBP1Q8N6Y0 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC36.47■■■■□ 3.43
USHBP1Q8N6Y0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC36.46■■■■□ 3.43
USHBP1Q8N6Y0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC36.44■■■■□ 3.42
USHBP1Q8N6Y0 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC36.43■■■■□ 3.42
USHBP1Q8N6Y0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC36.43■■■■□ 3.42
USHBP1Q8N6Y0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC36.42■■■■□ 3.42
USHBP1Q8N6Y0 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
USHBP1Q8N6Y0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC36.4■■■■□ 3.42
USHBP1Q8N6Y0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC36.39■■■■□ 3.42
USHBP1Q8N6Y0 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC36.39■■■■□ 3.42
USHBP1Q8N6Y0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC36.39■■■■□ 3.42
USHBP1Q8N6Y0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC36.39■■■■□ 3.42
USHBP1Q8N6Y0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC36.36■■■■□ 3.41
USHBP1Q8N6Y0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
USHBP1Q8N6Y0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC36.33■■■■□ 3.41
USHBP1Q8N6Y0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC36.33■■■■□ 3.41
USHBP1Q8N6Y0 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC36.3■■■■□ 3.4
USHBP1Q8N6Y0 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC36.29■■■■□ 3.4
USHBP1Q8N6Y0 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC36.28■■■■□ 3.4
USHBP1Q8N6Y0 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC36.27■■■■□ 3.4
USHBP1Q8N6Y0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.4
USHBP1Q8N6Y0 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC36.26■■■■□ 3.39
USHBP1Q8N6Y0 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
USHBP1Q8N6Y0 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
USHBP1Q8N6Y0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC36.24■■■■□ 3.39
USHBP1Q8N6Y0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
USHBP1Q8N6Y0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC36.24■■■■□ 3.39
USHBP1Q8N6Y0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC36.24■■■■□ 3.39
USHBP1Q8N6Y0 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
USHBP1Q8N6Y0 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
USHBP1Q8N6Y0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC36.23■■■■□ 3.39
USHBP1Q8N6Y0 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
USHBP1Q8N6Y0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC36.23■■■■□ 3.39
USHBP1Q8N6Y0 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
USHBP1Q8N6Y0 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC36.22■■■■□ 3.39
USHBP1Q8N6Y0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC36.22■■■■□ 3.39
USHBP1Q8N6Y0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC36.22■■■■□ 3.39
USHBP1Q8N6Y0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC36.22■■■■□ 3.39
USHBP1Q8N6Y0 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC36.21■■■■□ 3.39
USHBP1Q8N6Y0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
USHBP1Q8N6Y0 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC36.19■■■■□ 3.38
USHBP1Q8N6Y0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC36.19■■■■□ 3.38
USHBP1Q8N6Y0 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC36.19■■■■□ 3.38
USHBP1Q8N6Y0 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
USHBP1Q8N6Y0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC36.18■■■■□ 3.38
USHBP1Q8N6Y0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC36.18■■■■□ 3.38
USHBP1Q8N6Y0 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
USHBP1Q8N6Y0 ZNRF2P2-203ENST00000454624 420 ntBASIC36.17■■■■□ 3.38
USHBP1Q8N6Y0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC36.16■■■■□ 3.38
USHBP1Q8N6Y0 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC36.15■■■■□ 3.38
USHBP1Q8N6Y0 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
USHBP1Q8N6Y0 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC36.13■■■■□ 3.37
USHBP1Q8N6Y0 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC36.13■■■■□ 3.37
USHBP1Q8N6Y0 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC36.13■■■■□ 3.37
USHBP1Q8N6Y0 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC36.12■■■■□ 3.37
USHBP1Q8N6Y0 HGH1-207ENST00000628266 258 ntTSL 5 BASIC36.12■■■■□ 3.37
USHBP1Q8N6Y0 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC36.11■■■■□ 3.37
USHBP1Q8N6Y0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
USHBP1Q8N6Y0 HLA-V-202ENST00000446817 847 ntBASIC36.11■■■■□ 3.37
USHBP1Q8N6Y0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC36.11■■■■□ 3.37
USHBP1Q8N6Y0 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC36.11■■■■□ 3.37
USHBP1Q8N6Y0 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC36.1■■■■□ 3.37
USHBP1Q8N6Y0 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC36.1■■■■□ 3.37
USHBP1Q8N6Y0 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC36.09■■■■□ 3.37
USHBP1Q8N6Y0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC36.09■■■■□ 3.37
USHBP1Q8N6Y0 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
USHBP1Q8N6Y0 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC36.08■■■■□ 3.37
USHBP1Q8N6Y0 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
USHBP1Q8N6Y0 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC36.06■■■■□ 3.36
USHBP1Q8N6Y0 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC36.05■■■■□ 3.36
USHBP1Q8N6Y0 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC36.05■■■■□ 3.36
USHBP1Q8N6Y0 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC36.04■■■■□ 3.36
USHBP1Q8N6Y0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC36.01■■■■□ 3.36
USHBP1Q8N6Y0 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.35
USHBP1Q8N6Y0 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC36■■■■□ 3.35
USHBP1Q8N6Y0 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
USHBP1Q8N6Y0 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC35.99■■■■□ 3.35
USHBP1Q8N6Y0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC35.99■■■■□ 3.35
USHBP1Q8N6Y0 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
USHBP1Q8N6Y0 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC35.97■■■■□ 3.35
USHBP1Q8N6Y0 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
USHBP1Q8N6Y0 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
USHBP1Q8N6Y0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC35.96■■■■□ 3.35
USHBP1Q8N6Y0 DUX4L29-201ENST00000425409 679 ntBASIC35.94■■■■□ 3.34
USHBP1Q8N6Y0 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC35.93■■■■□ 3.34
USHBP1Q8N6Y0 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC35.93■■■■□ 3.34
USHBP1Q8N6Y0 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
USHBP1Q8N6Y0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC35.91■■■■□ 3.34
USHBP1Q8N6Y0 AC021231.2-201ENST00000594613 730 ntBASIC35.91■■■■□ 3.34
USHBP1Q8N6Y0 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC35.9■■■■□ 3.34
USHBP1Q8N6Y0 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
USHBP1Q8N6Y0 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC35.9■■■■□ 3.34
USHBP1Q8N6Y0 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC35.9■■■■□ 3.34
USHBP1Q8N6Y0 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
USHBP1Q8N6Y0 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC35.89■■■■□ 3.34
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms