Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.98■■□□□ 1.43
LINC00346Q8IVM7 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
LINC00346Q8IVM7 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
LINC00346Q8IVM7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LINC00346Q8IVM7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LINC00346Q8IVM7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
LINC00346Q8IVM7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.94■■□□□ 1.42
LINC00346Q8IVM7 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
LINC00346Q8IVM7 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
LINC00346Q8IVM7 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
LINC00346Q8IVM7 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
LINC00346Q8IVM7 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
LINC00346Q8IVM7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC23.89■■□□□ 1.42
LINC00346Q8IVM7 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
LINC00346Q8IVM7 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.89■■□□□ 1.41
LINC00346Q8IVM7 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
LINC00346Q8IVM7 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.87■■□□□ 1.41
LINC00346Q8IVM7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
LINC00346Q8IVM7 ABCB10P1-201ENST00000614297 2181 ntBASIC23.86■■□□□ 1.41
LINC00346Q8IVM7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LINC00346Q8IVM7 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC23.84■■□□□ 1.41
LINC00346Q8IVM7 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LINC00346Q8IVM7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
LINC00346Q8IVM7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
LINC00346Q8IVM7 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.81■■□□□ 1.4
LINC00346Q8IVM7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.8■■□□□ 1.4
LINC00346Q8IVM7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
LINC00346Q8IVM7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC23.79■■□□□ 1.4
LINC00346Q8IVM7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LINC00346Q8IVM7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.79■■□□□ 1.4
LINC00346Q8IVM7 AL161658.1-201ENST00000623641 1967 ntBASIC23.79■■□□□ 1.4
LINC00346Q8IVM7 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
LINC00346Q8IVM7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.78■■□□□ 1.4
LINC00346Q8IVM7 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
LINC00346Q8IVM7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC23.75■■□□□ 1.39
LINC00346Q8IVM7 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
LINC00346Q8IVM7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LINC00346Q8IVM7 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
LINC00346Q8IVM7 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LINC00346Q8IVM7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LINC00346Q8IVM7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC23.73■■□□□ 1.39
LINC00346Q8IVM7 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LINC00346Q8IVM7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LINC00346Q8IVM7 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC23.72■■□□□ 1.39
LINC00346Q8IVM7 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC23.72■■□□□ 1.39
LINC00346Q8IVM7 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
LINC00346Q8IVM7 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LINC00346Q8IVM7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LINC00346Q8IVM7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
LINC00346Q8IVM7 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.7■■□□□ 1.38
LINC00346Q8IVM7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.7■■□□□ 1.38
LINC00346Q8IVM7 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
LINC00346Q8IVM7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
LINC00346Q8IVM7 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
LINC00346Q8IVM7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
LINC00346Q8IVM7 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
LINC00346Q8IVM7 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
LINC00346Q8IVM7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.67■■□□□ 1.38
LINC00346Q8IVM7 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LINC00346Q8IVM7 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LINC00346Q8IVM7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.66■■□□□ 1.38
LINC00346Q8IVM7 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
LINC00346Q8IVM7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LINC00346Q8IVM7 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
LINC00346Q8IVM7 AL133380.1-201ENST00000506013 324 ntBASIC23.65■■□□□ 1.38
LINC00346Q8IVM7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LINC00346Q8IVM7 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
LINC00346Q8IVM7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
LINC00346Q8IVM7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
LINC00346Q8IVM7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LINC00346Q8IVM7 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LINC00346Q8IVM7 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LINC00346Q8IVM7 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LINC00346Q8IVM7 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
LINC00346Q8IVM7 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
LINC00346Q8IVM7 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
LINC00346Q8IVM7 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
LINC00346Q8IVM7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
LINC00346Q8IVM7 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LINC00346Q8IVM7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LINC00346Q8IVM7 WASH5P-204ENST00000632292 975 ntBASIC23.59■■□□□ 1.37
LINC00346Q8IVM7 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LINC00346Q8IVM7 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LINC00346Q8IVM7 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC23.58■■□□□ 1.37
LINC00346Q8IVM7 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC23.58■■□□□ 1.37
LINC00346Q8IVM7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC23.58■■□□□ 1.37
LINC00346Q8IVM7 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
LINC00346Q8IVM7 RARRES2P7-201ENST00000567349 469 ntBASIC23.57■■□□□ 1.36
LINC00346Q8IVM7 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
LINC00346Q8IVM7 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
LINC00346Q8IVM7 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.56■■□□□ 1.36
LINC00346Q8IVM7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
LINC00346Q8IVM7 ABCB10P3-201ENST00000561950 2166 ntBASIC23.54■■□□□ 1.36
LINC00346Q8IVM7 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
LINC00346Q8IVM7 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
LINC00346Q8IVM7 ST7-AS1-201ENST00000456775 1889 ntBASIC23.53■■□□□ 1.36
LINC00346Q8IVM7 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
LINC00346Q8IVM7 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.52■■□□□ 1.36
LINC00346Q8IVM7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
LINC00346Q8IVM7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms