Protein–RNA interactions for Protein: P06748

NPM1, Nucleophosmin, humanhuman

Known RBP eCLIP

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1P06748 HNRNPD-209ENST00000513584 1240 ntTSL 239.41■■■■□ 3.91e-6■□□□□ 9.3
NPM1P06748 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC37.23■■■■□ 3.551e-6■□□□□ 9.3
NPM1P06748 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC34.87■■■■□ 3.171e-6■□□□□ 9.3
NPM1P06748 HNRNPD-207ENST00000509107 583 ntTSL 534.58■■■■□ 3.131e-6■□□□□ 9.3
NPM1P06748 LARP1-204ENST00000518297 2630 ntTSL 527.68■■■□□ 2.021e-6■□□□□ 9.3
NPM1P06748 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.091e-6■□□□□ 9.3
NPM1P06748 LARP1-215ENST00000524248 2128 ntTSL 520.83■□□□□ 0.921e-6■□□□□ 9.3
NPM1P06748 LARP1-203ENST00000518194 450 ntTSL 518.44■□□□□ 0.541e-6■□□□□ 9.3
NPM1P06748 LARP1-201ENST00000336314 6595 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.41e-6■□□□□ 9.3
NPM1P06748 HNRNPD-211ENST00000514671 1089 ntTSL 514.86□□□□□ -0.031e-6■□□□□ 9.3
NPM1P06748 HNRNPD-212ENST00000515432 545 ntTSL 514.13□□□□□ -0.151e-6■□□□□ 9.3
NPM1P06748 HNRNPD-208ENST00000509263 782 ntTSL 513.25□□□□□ -0.291e-6■□□□□ 9.3
NPM1P06748 LARP1-213ENST00000523163 843 ntTSL 513.25□□□□□ -0.291e-6■□□□□ 9.3
NPM1P06748 LARP1-210ENST00000519931 569 ntTSL 411.38□□□□□ -0.591e-6■□□□□ 9.3
NPM1P06748 LARP1-202ENST00000517616 501 ntTSL 57.9□□□□□ -1.141e-6■□□□□ 9.3
NPM1P06748 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.771e-8■□□□□ 9.2
NPM1P06748 XPO1-206ENST00000428210 6776 ntTSL 218.57■□□□□ 0.561e-8■□□□□ 9.2
NPM1P06748 XPO1-203ENST00000406957 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.411e-8■□□□□ 9.2
NPM1P06748 XPO1-209ENST00000443240 565 ntTSL 411.56□□□□□ -0.561e-8■□□□□ 9.2
NPM1P06748 XPO1-207ENST00000436018 318 ntTSL 49.02□□□□□ -0.971e-8■□□□□ 9.2
NPM1P06748 HBM-202ENST00000472539 592 ntTSL 534.16■■■■□ 3.062e-18■□□□□ 9.1
NPM1P06748 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.32e-18■□□□□ 9.1
NPM1P06748 PTMA-206ENST00000412128 863 ntTSL 341.81■■■■■ 4.283e-14■□□□□ 9
NPM1P06748 PTMA-205ENST00000410064 814 ntTSL 2 BASIC37.24■■■■□ 3.553e-14■□□□□ 9
NPM1P06748 PTMA-208ENST00000448874 1108 ntTSL 228.74■■■□□ 2.193e-14■□□□□ 9
NPM1P06748 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC27.1■■□□□ 1.939e-6■□□□□ 9
NPM1P06748 PTMA-212ENST00000481928 1635 ntTSL 326.17■■□□□ 1.783e-14■□□□□ 9
NPM1P06748 PTMA-211ENST00000468027 621 ntTSL 1 (best)21.57■■□□□ 1.043e-14■□□□□ 9
NPM1P06748 PTMA-210ENST00000467816 378 ntTSL 221.26■□□□□ 0.993e-14■□□□□ 9
NPM1P06748 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC21.22■□□□□ 0.999e-6■□□□□ 9
NPM1P06748 FAM238C-201ENST00000638416 868 ntTSL 2 BASIC19.57■□□□□ 0.729e-6■□□□□ 9
NPM1P06748 PTMA-201ENST00000341369 1212 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.493e-14■□□□□ 9
NPM1P06748 PTMA-209ENST00000466801 784 ntTSL 518.02■□□□□ 0.483e-14■□□□□ 9
NPM1P06748 PTMA-204ENST00000409683 933 ntAPPRIS ALT1 TSL 3 BASIC17.12■□□□□ 0.333e-14■□□□□ 9
NPM1P06748 PTMA-202ENST00000409115 1221 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.283e-14■□□□□ 9
NPM1P06748 PTMA-203ENST00000409321 735 ntTSL 3 BASIC16.55■□□□□ 0.243e-14■□□□□ 9
NPM1P06748 FAM238C-205ENST00000640641 391 ntBASIC14.82□□□□□ -0.049e-6■□□□□ 9
NPM1P06748 FAM238C-203ENST00000640121 3620 ntTSL 1 (best) BASIC13.57□□□□□ -0.249e-6■□□□□ 9
NPM1P06748 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC15.99■□□□□ 0.152e-55■□□□□ 8.9
NPM1P06748 MALAT1-202ENST00000534336 8708 ntBASIC11.49□□□□□ -0.572e-55■□□□□ 8.9
NPM1P06748 MIR4449-201ENST00000578365 66 ntBASIC44.5■■■■■ 4.714e-23■□□□□ 8.9
NPM1P06748 DANCR-203ENST00000441504 336 ntTSL 229.83■■■□□ 2.374e-23■□□□□ 8.9
NPM1P06748 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC26.9■■□□□ 1.94e-23■□□□□ 8.9
NPM1P06748 FUS-209ENST00000566605 1787 ntTSL 1 (best)37■■■■□ 3.514e-8■□□□□ 8.8
NPM1P06748 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC36.7■■■■□ 3.474e-8■□□□□ 8.8
NPM1P06748 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC35.97■■■■□ 3.354e-8■□□□□ 8.8
NPM1P06748 FUS-213ENST00000570090 544 ntTSL 232.34■■■□□ 2.774e-8■□□□□ 8.8
NPM1P06748 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.934e-8■□□□□ 8.8
NPM1P06748 FUS-206ENST00000487509 4920 ntTSL 218.6■□□□□ 0.574e-8■□□□□ 8.8
NPM1P06748 NEAT1-202ENST00000501122 22743 ntBASIC5.69□□□□□ -1.58e-9■□□□□ 8.4
NPM1P06748 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.492e-6■□□□□ 8.3
NPM1P06748 EIF5-203ENST00000558265 872 ntTSL 523.88■■□□□ 1.412e-6■□□□□ 8.3
NPM1P06748 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.52e-6■□□□□ 8.3
NPM1P06748 EIF5-205ENST00000558506 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.442e-6■□□□□ 8.3
NPM1P06748 EIF5-221ENST00000561439 719 ntTSL 214.74□□□□□ -0.052e-6■□□□□ 8.3
NPM1P06748 EIF5-219ENST00000561380 926 ntTSL 514.25□□□□□ -0.132e-6■□□□□ 8.3
NPM1P06748 EIF5-208ENST00000559011 386 ntTSL 212.91□□□□□ -0.342e-6■□□□□ 8.3
NPM1P06748 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC22.9■■□□□ 1.265e-33■□□□□ 8.3
NPM1P06748 SNORA50C-201ENST00000408535 133 ntBASIC20.4■□□□□ 0.865e-33■□□□□ 8.3
NPM1P06748 SNORA50.1-201ENST00000628590 135 ntBASIC20.4■□□□□ 0.865e-33■□□□□ 8.3
NPM1P06748 RPS3-213ENST00000529285 550 ntTSL 532.95■■■□□ 2.873e-45■□□□□ 8.2
NPM1P06748 RPS3-220ENST00000534555 387 ntTSL 328.31■■■□□ 2.123e-45■□□□□ 8.2
NPM1P06748 RPS3-206ENST00000526248 771 ntTSL 526.83■■□□□ 1.893e-45■□□□□ 8.2
NPM1P06748 RPS3-201ENST00000278572 907 ntTSL 3 BASIC25.37■■□□□ 1.653e-45■□□□□ 8.2
NPM1P06748 RPS3-216ENST00000530721 796 ntTSL 321.98■■□□□ 1.113e-45■□□□□ 8.2
NPM1P06748 RPS3-218ENST00000532872 737 ntTSL 321.98■■□□□ 1.113e-45■□□□□ 8.2
NPM1P06748 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.823e-45■□□□□ 8.2
NPM1P06748 RPS3-208ENST00000527273 390 ntTSL 319.96■□□□□ 0.793e-45■□□□□ 8.2
NPM1P06748 RPS3-212ENST00000529173 1373 ntTSL 518.8■□□□□ 0.63e-45■□□□□ 8.2
NPM1P06748 RPS3-211ENST00000528847 639 ntTSL 518.35■□□□□ 0.533e-45■□□□□ 8.2
NPM1P06748 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.443e-45■□□□□ 8.2
NPM1P06748 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.273e-45■□□□□ 8.2
NPM1P06748 RPS3-202ENST00000422465 903 ntTSL 216.41■□□□□ 0.223e-45■□□□□ 8.2
NPM1P06748 RPS3-207ENST00000526608 710 ntTSL 5 BASIC15.97■□□□□ 0.153e-45■□□□□ 8.2
NPM1P06748 RPS3-219ENST00000534440 564 ntTSL 2 BASIC15.8■□□□□ 0.123e-45■□□□□ 8.2
NPM1P06748 RPS3-214ENST00000530164 1878 ntTSL 1 (best) BASIC15.65■□□□□ 0.13e-45■□□□□ 8.2
NPM1P06748 RPS3-210ENST00000528439 473 ntTSL 315.28■□□□□ 0.043e-45■□□□□ 8.2
NPM1P06748 SNORD15A-201ENST00000384214 148 ntBASIC12.7□□□□□ -0.383e-45■□□□□ 8.2
NPM1P06748 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.153e-12■□□□□ 8.2
NPM1P06748 NAP1L1-206ENST00000544816 1597 ntTSL 2 BASIC20.13■□□□□ 0.813e-12■□□□□ 8.2
NPM1P06748 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.693e-12■□□□□ 8.2
NPM1P06748 NAP1L1-205ENST00000542344 1675 ntTSL 2 BASIC18.31■□□□□ 0.523e-12■□□□□ 8.2
NPM1P06748 NAP1L1-210ENST00000547773 1967 ntTSL 5 BASIC17.39■□□□□ 0.373e-12■□□□□ 8.2
NPM1P06748 NAP1L1-223ENST00000552013 679 ntTSL 214.91□□□□□ -0.023e-12■□□□□ 8.2
NPM1P06748 NAP1L1-216ENST00000549596 1838 ntTSL 2 BASIC14.45□□□□□ -0.13e-12■□□□□ 8.2
NPM1P06748 NAP1L1-225ENST00000552147 1009 ntTSL 513.53□□□□□ -0.243e-12■□□□□ 8.2
NPM1P06748 NAP1L1-203ENST00000431879 2031 ntTSL 2 BASIC12.81□□□□□ -0.363e-12■□□□□ 8.2
NPM1P06748 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC10.42□□□□□ -0.743e-12■□□□□ 8.2
NPM1P06748 NAP1L1-224ENST00000552056 1981 ntTSL 510.19□□□□□ -0.783e-12■□□□□ 8.2
NPM1P06748 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.943e-12■□□□□ 8.2
NPM1P06748 FDPS-208ENST00000470171 746 ntTSL 225.82■■□□□ 1.723e-6■□□□□ 8.1
NPM1P06748 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.683e-6■□□□□ 8.1
NPM1P06748 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC25.53■■□□□ 1.683e-6■□□□□ 8.1
NPM1P06748 FDPS-205ENST00000465559 677 ntTSL 325.3■■□□□ 1.643e-6■□□□□ 8.1
NPM1P06748 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC25.12■■□□□ 1.613e-6■□□□□ 8.1
NPM1P06748 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC24.58■■□□□ 1.533e-6■□□□□ 8.1
NPM1P06748 FDPS-210ENST00000474345 713 ntTSL 324.58■■□□□ 1.533e-6■□□□□ 8.1
NPM1P06748 FDPS-213ENST00000489003 976 ntTSL 224.58■■□□□ 1.533e-6■□□□□ 8.1
NPM1P06748 FDPS-216ENST00000491013 912 ntTSL 524.46■■□□□ 1.513e-6■□□□□ 8.1
NPM1P06748 FDPS-212ENST00000487002 2017 ntTSL 223■■□□□ 1.273e-6■□□□□ 8.1
Retrieved 100 of 408 protein–RNA pairs in 88.4 ms