RNA–Protein interactions for RNA: ENST00000487002.1

FDPS-212, Transcript of farnesyl diphosphate synthase, humanhuman

TSL 2

Gene FDPS, Length 2,017 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-212ENST00000487002 NISCHQ9Y2I1 1504 aa36.46■■■■□ 3.43
FDPS-212ENST00000487002 CCDC180Q9P1Z9 1646 aa31.47■■■□□ 2.63
FDPS-212ENST00000487002 ZCCHC6Q5VYS8 1495 aaKnown RBP30.83■■■□□ 2.53
FDPS-212ENST00000487002 SHROOM4Q9ULL8 1493 aa30.27■■■□□ 2.44
FDPS-212ENST00000487002 DCAF1Q9Y4B6 1507 aa30.18■■■□□ 2.42
FDPS-212ENST00000487002 DCAF8L2P0C7V8 631 aa29.71■■■□□ 2.35
FDPS-212ENST00000487002 SUPT5HO00267 1087 aaKnown RBP29.51■■■□□ 2.31
FDPS-212ENST00000487002 MYO15BQ96JP2 1530 aa29.51■■■□□ 2.31
FDPS-212ENST00000487002 NACADO15069 1562 aa29.06■■■□□ 2.24
FDPS-212ENST00000487002 ABCC9O60706 1549 aa29.05■■■□□ 2.24
FDPS-212ENST00000487002 SCRIBQ14160 1630 aa29.02■■■□□ 2.24
FDPS-212ENST00000487002 CHIC1Q5VXU3 224 aa28.72■■■□□ 2.19
FDPS-212ENST00000487002 RB1CC1Q8TDY2 1594 aa28.62■■■□□ 2.17
FDPS-212ENST00000487002 RSF1Q96T23 1441 aaPredicted RBP28.58■■■□□ 2.17
FDPS-212ENST00000487002 CECR2Q9BXF3 1484 aa28.24■■■□□ 2.11
FDPS-212ENST00000487002 MROH2BQ7Z745 1585 aa28.2■■■□□ 2.1
FDPS-212ENST00000487002 UNC13AQ9UPW8 1703 aa28.15■■■□□ 2.1
FDPS-212ENST00000487002 BAZ1AQ9NRL2 1556 aaPredicted RBP28.1■■■□□ 2.09
FDPS-212ENST00000487002 WIZO95785 1651 aa28.04■■■□□ 2.08
FDPS-212ENST00000487002 SMARCA4P51532 1647 aa27.89■■■□□ 2.05
FDPS-212ENST00000487002 TOP2AP11388 1531 aaKnown RBP27.77■■■□□ 2.04
FDPS-212ENST00000487002 BICRAQ9NZM4 1560 aa27.75■■■□□ 2.03
FDPS-212ENST00000487002 EIF4G1Q04637 1599 aaKnown RBP27.71■■■□□ 2.03
FDPS-212ENST00000487002 TRIM41Q8WV44 630 aa27.7■■■□□ 2.03
FDPS-212ENST00000487002 LOC105371045A0A1W2PR82 267 aa27.61■■■□□ 2.01
FDPS-212ENST00000487002 SMARCA2P51531 1590 aa27.54■■■□□ 2
FDPS-212ENST00000487002 PEG3Q9GZU2 1588 aa27.52■■■□□ 2
FDPS-212ENST00000487002 CCDC88BA6NC98 1476 aa27.46■■□□□ 1.99
FDPS-212ENST00000487002 PABPN1Q86U42 306 aaKnown RBP eCLIP27.38■■□□□ 1.97
FDPS-212ENST00000487002 PCGF6Q9BYE7 350 aa27.26■■□□□ 1.95
FDPS-212ENST00000487002 HRCP23327 699 aa27.2■■□□□ 1.94
FDPS-212ENST00000487002 FAM9AQ8IZU1 332 aaPredicted RBP27.19■■□□□ 1.94
FDPS-212ENST00000487002 ABCC8Q09428 1581 aa27.18■■□□□ 1.94
FDPS-212ENST00000487002 ATAD2BQ9ULI0 1458 aa27.17■■□□□ 1.94
FDPS-212ENST00000487002 BAZ1BQ9UIG0 1483 aaKnown RBP27.08■■□□□ 1.93
FDPS-212ENST00000487002 TRIM26Q12899 539 aaPredicted RBP27.07■■□□□ 1.92
FDPS-212ENST00000487002 EEA1Q15075 1411 aa26.97■■□□□ 1.91
FDPS-212ENST00000487002 WRNQ14191 1432 aaPredicted RBP eCLIP26.89■■□□□ 1.9
FDPS-212ENST00000487002 HMGXB3Q12766 1538 aa26.88■■□□□ 1.89
FDPS-212ENST00000487002 SOGA1O94964 1423 aa26.81■■□□□ 1.88
FDPS-212ENST00000487002 NCAPD3P42695 1498 aa26.79■■□□□ 1.88
FDPS-212ENST00000487002 SYNJ1O43426 1573 aa26.78■■□□□ 1.88
FDPS-212ENST00000487002 EHMT2Q96KQ7 1210 aa26.75■■□□□ 1.87
FDPS-212ENST00000487002 TNIKQ9UKE5 1360 aa26.69■■□□□ 1.86
FDPS-212ENST00000487002 CSRNP3Q8WYN3 585 aa26.66■■□□□ 1.86
FDPS-212ENST00000487002 RUSC2Q8N2Y8 1516 aa26.66■■□□□ 1.86
FDPS-212ENST00000487002 GOLGA3Q08378 1498 aa26.64■■□□□ 1.85
FDPS-212ENST00000487002 TOP2BQ02880 1626 aa26.62■■□□□ 1.85
FDPS-212ENST00000487002 CEP162Q5TB80 1403 aa26.62■■□□□ 1.85
FDPS-212ENST00000487002 KIF21BO75037 1637 aa26.62■■□□□ 1.85
FDPS-212ENST00000487002 BIVM-ERCC5R4GMW8 1640 aa26.6■■□□□ 1.85
FDPS-212ENST00000487002 CEP164Q9UPV0 1460 aa26.55■■□□□ 1.84
FDPS-212ENST00000487002 PRDM2Q13029 1718 aa26.48■■□□□ 1.83
FDPS-212ENST00000487002 ZEB1P37275 1124 aaPredicted RBP26.46■■□□□ 1.83
FDPS-212ENST00000487002 CFTRP13569 1480 aa26.45■■□□□ 1.82
FDPS-212ENST00000487002 PPARGC1BQ86YN6 1023 aaKnown RBP26.39■■□□□ 1.81
FDPS-212ENST00000487002 UBTFP17480 764 aaKnown RBP26.38■■□□□ 1.81
FDPS-212ENST00000487002 CUX1P39880 1505 aa26.32■■□□□ 1.8
FDPS-212ENST00000487002 ERICH3Q5RHP9 1530 aa26.27■■□□□ 1.8
FDPS-212ENST00000487002 RAPGEF2Q9Y4G8 1499 aa26.24■■□□□ 1.79
FDPS-212ENST00000487002 CC2D2AQ9P2K1 1620 aa26.24■■□□□ 1.79
FDPS-212ENST00000487002 CLIP1P30622 1438 aa26.21■■□□□ 1.79
FDPS-212ENST00000487002 PRXQ9BXM0 1461 aa26.18■■□□□ 1.78
FDPS-212ENST00000487002 CADPSQ9ULU8 1353 aa26.14■■□□□ 1.78
FDPS-212ENST00000487002 KIF27Q86VH2 1401 aa26.13■■□□□ 1.77
FDPS-212ENST00000487002 VPS8Q8N3P4 1428 aa26.12■■□□□ 1.77
FDPS-212ENST00000487002 FGD5Q6ZNL6 1462 aa25.9■■□□□ 1.74
FDPS-212ENST00000487002 FANCD2Q9BXW9 1451 aa25.88■■□□□ 1.73
FDPS-212ENST00000487002 ARAP1Q96P48 1450 aa25.87■■□□□ 1.73
FDPS-212ENST00000487002 CUX2O14529 1486 aa25.87■■□□□ 1.73
FDPS-212ENST00000487002 TTBK1Q5TCY1 1321 aaPredicted RBP25.86■■□□□ 1.73
FDPS-212ENST00000487002 DNMBPQ6XZF7 1577 aa25.85■■□□□ 1.73
FDPS-212ENST00000487002 CCER1Q8TC90 406 aaPredicted RBP25.85■■□□□ 1.73
FDPS-212ENST00000487002 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.84■■□□□ 1.73
FDPS-212ENST00000487002 APLP2Q06481 763 aa25.81■■□□□ 1.72
FDPS-212ENST00000487002 LAMC3Q9Y6N6 1575 aa25.79■■□□□ 1.72
FDPS-212ENST00000487002 IGF1RP08069 1367 aa25.78■■□□□ 1.72
FDPS-212ENST00000487002 TOPBP1Q92547 1522 aa25.72■■□□□ 1.71
FDPS-212ENST00000487002 ARHGAP35Q9NRY4 1499 aa25.71■■□□□ 1.71
FDPS-212ENST00000487002 ABCA10Q8WWZ4 1543 aa25.7■■□□□ 1.7
FDPS-212ENST00000487002 CARMIL1Q5VZK9 1371 aa25.67■■□□□ 1.7
FDPS-212ENST00000487002 RANGAP1P46060 587 aaPredicted RBP25.67■■□□□ 1.7
FDPS-212ENST00000487002 NESP48681 1621 aa25.66■■□□□ 1.7
FDPS-212ENST00000487002 POLA1P09884 1462 aaPredicted RBP25.65■■□□□ 1.7
FDPS-212ENST00000487002 CUL7Q14999 1698 aa25.61■■□□□ 1.69
FDPS-212ENST00000487002 WDR97A6NE52 1622 aa25.6■■□□□ 1.69
FDPS-212ENST00000487002 MAP3K1Q13233 1512 aa25.55■■□□□ 1.68
FDPS-212ENST00000487002 RAD54L2Q9Y4B4 1467 aa25.55■■□□□ 1.68
FDPS-212ENST00000487002 URB2Q14146 1524 aaKnown RBP25.53■■□□□ 1.68
FDPS-212ENST00000487002 PDS5BQ9NTI5 1447 aa25.51■■□□□ 1.67
FDPS-212ENST00000487002 RRBP1Q9P2E9 1410 aaKnown RBP25.49■■□□□ 1.67
FDPS-212ENST00000487002 HNRNPUL2Q1KMD3 747 aaKnown RBP25.47■■□□□ 1.67
FDPS-212ENST00000487002 CTTNBP2Q8WZ74 1663 aa25.47■■□□□ 1.67
FDPS-212ENST00000487002 ABCA5Q8WWZ7 1642 aa25.46■■□□□ 1.67
FDPS-212ENST00000487002 TIAM1Q13009 1591 aa25.45■■□□□ 1.67
FDPS-212ENST00000487002 EFCAB5A4FU69 1503 aa25.45■■□□□ 1.66
FDPS-212ENST00000487002 KANK4Q5T7N3 995 aaPredicted RBP25.44■■□□□ 1.66
FDPS-212ENST00000487002 KIF21AQ7Z4S6 1674 aa25.43■■□□□ 1.66
FDPS-212ENST00000487002 FHAD1B1AJZ9 1412 aa25.43■■□□□ 1.66
FDPS-212ENST00000487002 CFAP43Q8NDM7 1665 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms