RNA–Protein interactions for RNA: ENST00000534555.5

RPS3-220, Transcript of ribosomal protein S3, humanhuman

TSL 3

Gene RPS3, Length 387 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3-220ENST00000534555 NISCHQ9Y2I1 1504 aa40.32■■■■■ 4.05
RPS3-220ENST00000534555 ABCC9O60706 1549 aa36.8■■■■□ 3.48
RPS3-220ENST00000534555 CCDC180Q9P1Z9 1646 aa36.27■■■■□ 3.4
RPS3-220ENST00000534555 DNAJC5BQ9UF47 199 aa34.95■■■■□ 3.19
RPS3-220ENST00000534555 RB1CC1Q8TDY2 1594 aa34.76■■■■□ 3.16
RPS3-220ENST00000534555 NACADO15069 1562 aa34.41■■■■□ 3.1
RPS3-220ENST00000534555 DCAF8L2P0C7V8 631 aa34.34■■■■□ 3.09
RPS3-220ENST00000534555 PABPN1Q86U42 306 aaKnown RBP eCLIP34.26■■■■□ 3.08
RPS3-220ENST00000534555 UNC13AQ9UPW8 1703 aa34.01■■■■□ 3.04
RPS3-220ENST00000534555 BICRAQ9NZM4 1560 aa33.81■■■■□ 3
RPS3-220ENST00000534555 MYO15BQ96JP2 1530 aa33.76■■■■□ 3
RPS3-220ENST00000534555 ZCCHC6Q5VYS8 1495 aaKnown RBP33.31■■■□□ 2.92
RPS3-220ENST00000534555 DCAF1Q9Y4B6 1507 aa33.21■■■□□ 2.91
RPS3-220ENST00000534555 CC2D2AQ9P2K1 1620 aa33.18■■■□□ 2.9
RPS3-220ENST00000534555 SHROOM4Q9ULL8 1493 aa33.18■■■□□ 2.9
RPS3-220ENST00000534555 CECR2Q9BXF3 1484 aa33.16■■■□□ 2.9
RPS3-220ENST00000534555 SCRIBQ14160 1630 aa33.13■■■□□ 2.89
RPS3-220ENST00000534555 EIF4G1Q04637 1599 aaKnown RBP33■■■□□ 2.87
RPS3-220ENST00000534555 DNAJC5Q9H3Z4 198 aa32.3■■■□□ 2.76
RPS3-220ENST00000534555 NCAPD3P42695 1498 aa31.81■■■□□ 2.68
RPS3-220ENST00000534555 CUX2O14529 1486 aa31.78■■■□□ 2.68
RPS3-220ENST00000534555 ERCC6Q03468 1493 aa31.75■■■□□ 2.67
RPS3-220ENST00000534555 ATAD2BQ9ULI0 1458 aa31.69■■■□□ 2.66
RPS3-220ENST00000534555 SMARCA4P51532 1647 aa31.53■■■□□ 2.64
RPS3-220ENST00000534555 NESP48681 1621 aa31.52■■■□□ 2.64
RPS3-220ENST00000534555 SMARCA2P51531 1590 aa31.51■■■□□ 2.63
RPS3-220ENST00000534555 HMGXB3Q12766 1538 aa31.49■■■□□ 2.63
RPS3-220ENST00000534555 BAZ1BQ9UIG0 1483 aaKnown RBP31.33■■■□□ 2.61
RPS3-220ENST00000534555 BAZ1AQ9NRL2 1556 aaPredicted RBP31.3■■■□□ 2.6
RPS3-220ENST00000534555 THOC2Q8NI27 1593 aaKnown RBP31.2■■■□□ 2.58
RPS3-220ENST00000534555 PEG3Q9GZU2 1588 aa31.18■■■□□ 2.58
RPS3-220ENST00000534555 LAMC3Q9Y6N6 1575 aa31.13■■■□□ 2.57
RPS3-220ENST00000534555 MROH2BQ7Z745 1585 aa31.11■■■□□ 2.57
RPS3-220ENST00000534555 KIF21AQ7Z4S6 1674 aa31.04■■■□□ 2.56
RPS3-220ENST00000534555 PDS5BQ9NTI5 1447 aa30.98■■■□□ 2.55
RPS3-220ENST00000534555 CADPSQ9ULU8 1353 aa30.85■■■□□ 2.53
RPS3-220ENST00000534555 TRIM41Q8WV44 630 aa30.79■■■□□ 2.52
RPS3-220ENST00000534555 MRC2Q9UBG0 1479 aa30.75■■■□□ 2.51
RPS3-220ENST00000534555 WIZO95785 1651 aa30.73■■■□□ 2.51
RPS3-220ENST00000534555 WDR62O43379 1518 aa30.67■■■□□ 2.5
RPS3-220ENST00000534555 CEP164Q9UPV0 1460 aa30.54■■■□□ 2.48
RPS3-220ENST00000534555 FANCD2Q9BXW9 1451 aa30.5■■■□□ 2.47
RPS3-220ENST00000534555 CFTRP13569 1480 aa30.39■■■□□ 2.46
RPS3-220ENST00000534555 OSCARQ8IYS5 282 aa30.34■■■□□ 2.45
RPS3-220ENST00000534555 RSF1Q96T23 1441 aaPredicted RBP30.31■■■□□ 2.44
RPS3-220ENST00000534555 URB2Q14146 1524 aaKnown RBP30.29■■■□□ 2.44
RPS3-220ENST00000534555 TOP2AP11388 1531 aaKnown RBP30.24■■■□□ 2.43
RPS3-220ENST00000534555 ZNF608Q9ULD9 1512 aaPredicted RBP30.01■■■□□ 2.39
RPS3-220ENST00000534555 PRDM2Q13029 1718 aa30■■■□□ 2.39
RPS3-220ENST00000534555 RIMBP3CA6NJZ7 1639 aa29.97■■■□□ 2.39
RPS3-220ENST00000534555 RIMBP3BA6NNM3 1639 aa29.97■■■□□ 2.39
RPS3-220ENST00000534555 RIMBP3Q9UFD9 1639 aa29.97■■■□□ 2.39
RPS3-220ENST00000534555 CCDC88BA6NC98 1476 aa29.97■■■□□ 2.39
RPS3-220ENST00000534555 IFT140Q96RY7 1462 aa29.93■■■□□ 2.38
RPS3-220ENST00000534555 TOPBP1Q92547 1522 aa29.88■■■□□ 2.37
RPS3-220ENST00000534555 ARHGEF11O15085 1522 aa29.83■■■□□ 2.37
RPS3-220ENST00000534555 EIF4G3O43432 1585 aaKnown RBP29.76■■■□□ 2.35
RPS3-220ENST00000534555 ABCC8Q09428 1581 aa29.72■■■□□ 2.35
RPS3-220ENST00000534555 CYB5RLQ6IPT4 315 aa29.71■■■□□ 2.35
RPS3-220ENST00000534555 DNMBPQ6XZF7 1577 aa29.7■■■□□ 2.35
RPS3-220ENST00000534555 AQRO60306 1485 aaKnown RBP eCLIP29.69■■■□□ 2.342e-7■■□□□ 11.4
RPS3-220ENST00000534555 TARBP1Q13395 1621 aaKnown RBP29.63■■■□□ 2.33
RPS3-220ENST00000534555 CHD1O14646 1710 aa29.62■■■□□ 2.33
RPS3-220ENST00000534555 FBLN2P98095 1184 aa29.6■■■□□ 2.33
RPS3-220ENST00000534555 POLA1P09884 1462 aaPredicted RBP29.55■■■□□ 2.32
RPS3-220ENST00000534555 ARAP1Q96P48 1450 aa29.53■■■□□ 2.32
RPS3-220ENST00000534555 RAD54L2Q9Y4B4 1467 aa29.51■■■□□ 2.31
RPS3-220ENST00000534555 TRHP20396 242 aaPredicted RBP29.51■■■□□ 2.31
RPS3-220ENST00000534555 TDRD9Q8NDG6 1382 aaKnown RBP29.46■■■□□ 2.31
RPS3-220ENST00000534555 SOGA1O94964 1423 aa29.44■■■□□ 2.3
RPS3-220ENST00000534555 SNAPC4Q5SXM2 1469 aa29.35■■■□□ 2.29
RPS3-220ENST00000534555 FGD5Q6ZNL6 1462 aa29.32■■■□□ 2.28
RPS3-220ENST00000534555 CHMP7Q8WUX9 453 aaPredicted RBP29.28■■■□□ 2.28
RPS3-220ENST00000534555 CLASP1Q7Z460 1538 aa29.26■■■□□ 2.27
RPS3-220ENST00000534555 CUX1P39880 1505 aa29.24■■■□□ 2.27
RPS3-220ENST00000534555 WDR97A6NE52 1622 aa29.21■■■□□ 2.27
RPS3-220ENST00000534555 SYNJ1O43426 1573 aa29.19■■■□□ 2.26
RPS3-220ENST00000534555 GRIN2BQ13224 1484 aa29.18■■■□□ 2.26
RPS3-220ENST00000534555 MAGI1Q96QZ7 1491 aaPredicted RBP29.18■■■□□ 2.26
RPS3-220ENST00000534555 SYNJ2O15056 1496 aa29.12■■■□□ 2.25
RPS3-220ENST00000534555 GAPVD1Q14C86 1478 aa29.04■■■□□ 2.24
RPS3-220ENST00000534555 PBRM1Q86U86 1689 aa29.03■■■□□ 2.24
RPS3-220ENST00000534555 ABCA10Q8WWZ4 1543 aa28.93■■■□□ 2.22
RPS3-220ENST00000534555 ABCA5Q8WWZ7 1642 aa28.91■■■□□ 2.22
RPS3-220ENST00000534555 AEBP2Q6ZN18 517 aaPredicted RBP28.91■■■□□ 2.22
RPS3-220ENST00000534555 ERCC6L2Q5T890 1561 aa28.86■■■□□ 2.21
RPS3-220ENST00000534555 GRIN2AQ12879 1464 aa28.81■■■□□ 2.2
RPS3-220ENST00000534555 SUPT5HO00267 1087 aaKnown RBP28.77■■■□□ 2.2
RPS3-220ENST00000534555 CEP170Q5SW79 1584 aa28.75■■■□□ 2.19
RPS3-220ENST00000534555 WRNQ14191 1432 aaPredicted RBP eCLIP28.74■■■□□ 2.19
RPS3-220ENST00000534555 ADAMTS12P58397 1594 aa28.73■■■□□ 2.19
RPS3-220ENST00000534555 NUP160Q12769 1436 aa28.72■■■□□ 2.19
RPS3-220ENST00000534555 FHAD1B1AJZ9 1412 aa28.64■■■□□ 2.18
RPS3-220ENST00000534555 SHROOM2Q13796 1616 aa28.62■■■□□ 2.17
RPS3-220ENST00000534555 TOP2BQ02880 1626 aa28.61■■■□□ 2.17
RPS3-220ENST00000534555 BIVM-ERCC5R4GMW8 1640 aa28.61■■■□□ 2.17
RPS3-220ENST00000534555 ERICH3Q5RHP9 1530 aa28.53■■■□□ 2.16
RPS3-220ENST00000534555 PRG4Q92954 1404 aaPredicted RBP28.52■■■□□ 2.16
RPS3-220ENST00000534555 JPH4Q96JJ6 628 aa28.49■■■□□ 2.15
RPS3-220ENST00000534555 KIF13AQ9H1H9 1805 aa28.48■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms