RNA–Protein interactions for RNA: ENST00000470171.5

FDPS-208, Transcript of farnesyl diphosphate synthase, humanhuman

TSL 2

Gene FDPS, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-208ENST00000470171 NISCHQ9Y2I1 1504 aa37.56■■■■□ 3.6
FDPS-208ENST00000470171 CCDC180Q9P1Z9 1646 aa33.42■■■□□ 2.94
FDPS-208ENST00000470171 ABCC9O60706 1549 aa32.81■■■□□ 2.84
FDPS-208ENST00000470171 RB1CC1Q8TDY2 1594 aa31.61■■■□□ 2.65
FDPS-208ENST00000470171 NACADO15069 1562 aa31.59■■■□□ 2.65
FDPS-208ENST00000470171 MYO15BQ96JP2 1530 aa31.47■■■□□ 2.63
FDPS-208ENST00000470171 DCAF8L2P0C7V8 631 aa31.45■■■□□ 2.63
FDPS-208ENST00000470171 ZCCHC6Q5VYS8 1495 aaKnown RBP31.23■■■□□ 2.59
FDPS-208ENST00000470171 DCAF1Q9Y4B6 1507 aa31.2■■■□□ 2.59
FDPS-208ENST00000470171 PABPN1Q86U42 306 aaKnown RBP eCLIP30.67■■■□□ 2.56e-8■□□□□ 8.9
FDPS-208ENST00000470171 SHROOM4Q9ULL8 1493 aa30.53■■■□□ 2.48
FDPS-208ENST00000470171 BICRAQ9NZM4 1560 aa30.5■■■□□ 2.47
FDPS-208ENST00000470171 UNC13AQ9UPW8 1703 aa30.5■■■□□ 2.47
FDPS-208ENST00000470171 SCRIBQ14160 1630 aa30.33■■■□□ 2.45
FDPS-208ENST00000470171 DNAJC5BQ9UF47 199 aa30.28■■■□□ 2.44
FDPS-208ENST00000470171 EIF4G1Q04637 1599 aaKnown RBP29.79■■■□□ 2.36
FDPS-208ENST00000470171 CC2D2AQ9P2K1 1620 aa29.65■■■□□ 2.34
FDPS-208ENST00000470171 CECR2Q9BXF3 1484 aa29.61■■■□□ 2.33
FDPS-208ENST00000470171 NCAPD3P42695 1498 aa29.19■■■□□ 2.26
FDPS-208ENST00000470171 BAZ1AQ9NRL2 1556 aaPredicted RBP29.17■■■□□ 2.26
FDPS-208ENST00000470171 ATAD2BQ9ULI0 1458 aa29.09■■■□□ 2.25
FDPS-208ENST00000470171 SMARCA2P51531 1590 aa29.09■■■□□ 2.25
FDPS-208ENST00000470171 SMARCA4P51532 1647 aa29.09■■■□□ 2.25
FDPS-208ENST00000470171 HMGXB3Q12766 1538 aa28.95■■■□□ 2.23
FDPS-208ENST00000470171 PEG3Q9GZU2 1588 aa28.93■■■□□ 2.22
FDPS-208ENST00000470171 BAZ1BQ9UIG0 1483 aaKnown RBP28.84■■■□□ 2.21
FDPS-208ENST00000470171 MROH2BQ7Z745 1585 aa28.84■■■□□ 2.21
FDPS-208ENST00000470171 RSF1Q96T23 1441 aaPredicted RBP28.55■■■□□ 2.16
FDPS-208ENST00000470171 ERCC6Q03468 1493 aa28.41■■■□□ 2.14
FDPS-208ENST00000470171 WIZO95785 1651 aa28.41■■■□□ 2.14
FDPS-208ENST00000470171 LAMC3Q9Y6N6 1575 aa28.37■■■□□ 2.13
FDPS-208ENST00000470171 CADPSQ9ULU8 1353 aa28.34■■■□□ 2.13
FDPS-208ENST00000470171 PDS5BQ9NTI5 1447 aa28.31■■■□□ 2.12
FDPS-208ENST00000470171 NESP48681 1621 aa28.28■■■□□ 2.12
FDPS-208ENST00000470171 TOP2AP11388 1531 aaKnown RBP28.28■■■□□ 2.12
FDPS-208ENST00000470171 CUX2O14529 1486 aa28.27■■■□□ 2.12
FDPS-208ENST00000470171 CFTRP13569 1480 aa28.08■■■□□ 2.09
FDPS-208ENST00000470171 CCDC88BA6NC98 1476 aa27.95■■■□□ 2.06
FDPS-208ENST00000470171 FANCD2Q9BXW9 1451 aa27.91■■■□□ 2.06
FDPS-208ENST00000470171 MRC2Q9UBG0 1479 aa27.9■■■□□ 2.06
FDPS-208ENST00000470171 CEP164Q9UPV0 1460 aa27.9■■■□□ 2.06
FDPS-208ENST00000470171 THOC2Q8NI27 1593 aaKnown RBP27.9■■■□□ 2.06
FDPS-208ENST00000470171 KIF21AQ7Z4S6 1674 aa27.83■■■□□ 2.05
FDPS-208ENST00000470171 WDR62O43379 1518 aa27.78■■■□□ 2.04
FDPS-208ENST00000470171 SUPT5HO00267 1087 aaKnown RBP27.64■■■□□ 2.02
FDPS-208ENST00000470171 DNAJC5Q9H3Z4 198 aa27.62■■■□□ 2.01
FDPS-208ENST00000470171 ABCC8Q09428 1581 aa27.61■■■□□ 2.01
FDPS-208ENST00000470171 URB2Q14146 1524 aaKnown RBP27.56■■■□□ 2
FDPS-208ENST00000470171 PRDM2Q13029 1718 aa27.55■■■□□ 2
FDPS-208ENST00000470171 TOPBP1Q92547 1522 aa27.41■■□□□ 1.98
FDPS-208ENST00000470171 IFT140Q96RY7 1462 aa27.39■■□□□ 1.98
FDPS-208ENST00000470171 DNMBPQ6XZF7 1577 aa27.36■■□□□ 1.97
FDPS-208ENST00000470171 POLA1P09884 1462 aaPredicted RBP27.16■■□□□ 1.94
FDPS-208ENST00000470171 SOGA1O94964 1423 aa27.14■■□□□ 1.93
FDPS-208ENST00000470171 OSCARQ8IYS5 282 aa27.12■■□□□ 1.93
FDPS-208ENST00000470171 ZNF608Q9ULD9 1512 aaPredicted RBP27.1■■□□□ 1.93
FDPS-208ENST00000470171 CUX1P39880 1505 aa27.06■■□□□ 1.92
FDPS-208ENST00000470171 FGD5Q6ZNL6 1462 aa27.05■■□□□ 1.92
FDPS-208ENST00000470171 TARBP1Q13395 1621 aaKnown RBP27.05■■□□□ 1.92
FDPS-208ENST00000470171 WDR97A6NE52 1622 aa27.03■■□□□ 1.92
FDPS-208ENST00000470171 AQRO60306 1485 aaKnown RBP eCLIP26.98■■□□□ 1.913e-7■■■■□ 26.2
FDPS-208ENST00000470171 RAD54L2Q9Y4B4 1467 aa26.98■■□□□ 1.91
FDPS-208ENST00000470171 WRNQ14191 1432 aaPredicted RBP eCLIP26.97■■□□□ 1.91
FDPS-208ENST00000470171 EIF4G3O43432 1585 aaKnown RBP26.95■■□□□ 1.9
FDPS-208ENST00000470171 TDRD9Q8NDG6 1382 aaKnown RBP26.94■■□□□ 1.9
FDPS-208ENST00000470171 ABCA10Q8WWZ4 1543 aa26.87■■□□□ 1.89
FDPS-208ENST00000470171 GRIN2BQ13224 1484 aa26.85■■□□□ 1.89
FDPS-208ENST00000470171 TOP2BQ02880 1626 aa26.84■■□□□ 1.89
FDPS-208ENST00000470171 MAGI1Q96QZ7 1491 aaPredicted RBP26.81■■□□□ 1.88
FDPS-208ENST00000470171 GAPVD1Q14C86 1478 aa26.79■■□□□ 1.88
FDPS-208ENST00000470171 BIVM-ERCC5R4GMW8 1640 aa26.77■■□□□ 1.88
FDPS-208ENST00000470171 FBLN2P98095 1184 aa26.76■■□□□ 1.87
FDPS-208ENST00000470171 CHMP7Q8WUX9 453 aaPredicted RBP26.76■■□□□ 1.87
FDPS-208ENST00000470171 SNAPC4Q5SXM2 1469 aa26.72■■□□□ 1.87
FDPS-208ENST00000470171 SYNJ1O43426 1573 aa26.71■■□□□ 1.87
FDPS-208ENST00000470171 SYNJ2O15056 1496 aa26.68■■□□□ 1.86
FDPS-208ENST00000470171 ABCA5Q8WWZ7 1642 aa26.64■■□□□ 1.85
FDPS-208ENST00000470171 ERICH3Q5RHP9 1530 aa26.56■■□□□ 1.84
FDPS-208ENST00000470171 FHAD1B1AJZ9 1412 aa26.54■■□□□ 1.84
FDPS-208ENST00000470171 CHD1O14646 1710 aa26.51■■□□□ 1.83
FDPS-208ENST00000470171 PBRM1Q86U86 1689 aa26.49■■□□□ 1.83
FDPS-208ENST00000470171 KIF27Q86VH2 1401 aa26.48■■□□□ 1.83
FDPS-208ENST00000470171 ARHGEF11O15085 1522 aa26.48■■□□□ 1.83
FDPS-208ENST00000470171 TRIM41Q8WV44 630 aa26.47■■□□□ 1.83
FDPS-208ENST00000470171 GRIN2AQ12879 1464 aa26.44■■□□□ 1.82
FDPS-208ENST00000470171 CLASP1Q7Z460 1538 aa26.43■■□□□ 1.82
FDPS-208ENST00000470171 ADAMTS12P58397 1594 aa26.41■■□□□ 1.82
FDPS-208ENST00000470171 RIMBP3CA6NJZ7 1639 aa26.4■■□□□ 1.82
FDPS-208ENST00000470171 RIMBP3BA6NNM3 1639 aa26.4■■□□□ 1.82
FDPS-208ENST00000470171 RIMBP3Q9UFD9 1639 aa26.4■■□□□ 1.82
FDPS-208ENST00000470171 NUP160Q12769 1436 aa26.38■■□□□ 1.81
FDPS-208ENST00000470171 IGF1RP08069 1367 aa26.36■■□□□ 1.81
FDPS-208ENST00000470171 CYB5RLQ6IPT4 315 aa26.32■■□□□ 1.8
FDPS-208ENST00000470171 ARAP1Q96P48 1450 aa26.23■■□□□ 1.79
FDPS-208ENST00000470171 CARMIL1Q5VZK9 1371 aa26.2■■□□□ 1.79
FDPS-208ENST00000470171 CUL7Q14999 1698 aa26.2■■□□□ 1.78
FDPS-208ENST00000470171 CEP170Q5SW79 1584 aa26.19■■□□□ 1.78
FDPS-208ENST00000470171 JPH4Q96JJ6 628 aa26.17■■□□□ 1.78
FDPS-208ENST00000470171 KIAA0586Q9BVV6 1533 aa26.13■■□□□ 1.77
FDPS-208ENST00000470171 SHROOM2Q13796 1616 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms