RNA–Protein interactions for RNA: ENST00000356657.10

FDPS-201, Transcript of farnesyl diphosphate synthase, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene FDPS, Length 1,478 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-201ENST00000356657 NISCHQ9Y2I1 1504 aa38.19■■■■□ 3.7
FDPS-201ENST00000356657 CCDC180Q9P1Z9 1646 aa33.91■■■■□ 3.02
FDPS-201ENST00000356657 ABCC9O60706 1549 aa32.76■■■□□ 2.83
FDPS-201ENST00000356657 ZCCHC6Q5VYS8 1495 aaKnown RBP31.92■■■□□ 2.7
FDPS-201ENST00000356657 MYO15BQ96JP2 1530 aa31.77■■■□□ 2.68
FDPS-201ENST00000356657 NACADO15069 1562 aa31.75■■■□□ 2.67
FDPS-201ENST00000356657 DCAF1Q9Y4B6 1507 aa31.74■■■□□ 2.67
FDPS-201ENST00000356657 RB1CC1Q8TDY2 1594 aa31.67■■■□□ 2.66
FDPS-201ENST00000356657 DCAF8L2P0C7V8 631 aa31.53■■■□□ 2.64
FDPS-201ENST00000356657 UNC13AQ9UPW8 1703 aa30.9■■■□□ 2.54
FDPS-201ENST00000356657 SCRIBQ14160 1630 aa30.79■■■□□ 2.52
FDPS-201ENST00000356657 BICRAQ9NZM4 1560 aa30.6■■■□□ 2.49
FDPS-201ENST00000356657 PABPN1Q86U42 306 aaKnown RBP eCLIP30.56■■■□□ 2.482e-8■□□□□ 9.5
FDPS-201ENST00000356657 SHROOM4Q9ULL8 1493 aa30.55■■■□□ 2.48
FDPS-201ENST00000356657 DNAJC5BQ9UF47 199 aa30.01■■■□□ 2.4
FDPS-201ENST00000356657 EIF4G1Q04637 1599 aaKnown RBP29.8■■■□□ 2.36
FDPS-201ENST00000356657 BAZ1AQ9NRL2 1556 aaPredicted RBP29.63■■■□□ 2.33
FDPS-201ENST00000356657 CC2D2AQ9P2K1 1620 aa29.63■■■□□ 2.33
FDPS-201ENST00000356657 CECR2Q9BXF3 1484 aa29.58■■■□□ 2.33
FDPS-201ENST00000356657 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
FDPS-201ENST00000356657 MROH2BQ7Z745 1585 aa29.36■■■□□ 2.29
FDPS-201ENST00000356657 SMARCA2P51531 1590 aa29.35■■■□□ 2.29
FDPS-201ENST00000356657 PEG3Q9GZU2 1588 aa29.35■■■□□ 2.29
FDPS-201ENST00000356657 ATAD2BQ9ULI0 1458 aa29.27■■■□□ 2.28
FDPS-201ENST00000356657 NCAPD3P42695 1498 aa29.24■■■□□ 2.27
FDPS-201ENST00000356657 HMGXB3Q12766 1538 aa29.19■■■□□ 2.26
FDPS-201ENST00000356657 RSF1Q96T23 1441 aaPredicted RBP29.19■■■□□ 2.26
FDPS-201ENST00000356657 BAZ1BQ9UIG0 1483 aaKnown RBP29.08■■■□□ 2.25
FDPS-201ENST00000356657 WIZO95785 1651 aa29.07■■■□□ 2.24
FDPS-201ENST00000356657 TOP2AP11388 1531 aaKnown RBP28.88■■■□□ 2.21
FDPS-201ENST00000356657 SUPT5HO00267 1087 aaKnown RBP28.6■■■□□ 2.17
FDPS-201ENST00000356657 CCDC88BA6NC98 1476 aa28.45■■■□□ 2.15
FDPS-201ENST00000356657 LAMC3Q9Y6N6 1575 aa28.45■■■□□ 2.15
FDPS-201ENST00000356657 CADPSQ9ULU8 1353 aa28.37■■■□□ 2.13
FDPS-201ENST00000356657 CFTRP13569 1480 aa28.31■■■□□ 2.12
FDPS-201ENST00000356657 ERCC6Q03468 1493 aa28.3■■■□□ 2.12
FDPS-201ENST00000356657 NESP48681 1621 aa28.29■■■□□ 2.12
FDPS-201ENST00000356657 PRDM2Q13029 1718 aa28.25■■■□□ 2.11
FDPS-201ENST00000356657 PDS5BQ9NTI5 1447 aa28.21■■■□□ 2.11
FDPS-201ENST00000356657 KIF21AQ7Z4S6 1674 aa28.06■■■□□ 2.08
FDPS-201ENST00000356657 FANCD2Q9BXW9 1451 aa28.03■■■□□ 2.08
FDPS-201ENST00000356657 CEP164Q9UPV0 1460 aa28.01■■■□□ 2.07
FDPS-201ENST00000356657 CUX2O14529 1486 aa27.95■■■□□ 2.07
FDPS-201ENST00000356657 THOC2Q8NI27 1593 aaKnown RBP27.91■■■□□ 2.06
FDPS-201ENST00000356657 MRC2Q9UBG0 1479 aa27.88■■■□□ 2.05
FDPS-201ENST00000356657 WDR62O43379 1518 aa27.8■■■□□ 2.04
FDPS-201ENST00000356657 ABCC8Q09428 1581 aa27.77■■■□□ 2.04
FDPS-201ENST00000356657 URB2Q14146 1524 aaKnown RBP27.7■■■□□ 2.03
FDPS-201ENST00000356657 DNMBPQ6XZF7 1577 aa27.7■■■□□ 2.02
FDPS-201ENST00000356657 TOPBP1Q92547 1522 aa27.64■■■□□ 2.01
FDPS-201ENST00000356657 WRNQ14191 1432 aaPredicted RBP eCLIP27.55■■■□□ 2
FDPS-201ENST00000356657 CUX1P39880 1505 aa27.54■■■□□ 2
FDPS-201ENST00000356657 BIVM-ERCC5R4GMW8 1640 aa27.5■■□□□ 1.99
FDPS-201ENST00000356657 TOP2BQ02880 1626 aa27.5■■□□□ 1.99
FDPS-201ENST00000356657 POLA1P09884 1462 aaPredicted RBP27.43■■□□□ 1.98
FDPS-201ENST00000356657 SYNJ1O43426 1573 aa27.42■■□□□ 1.98
FDPS-201ENST00000356657 IFT140Q96RY7 1462 aa27.41■■□□□ 1.98
FDPS-201ENST00000356657 FGD5Q6ZNL6 1462 aa27.41■■□□□ 1.98
FDPS-201ENST00000356657 TARBP1Q13395 1621 aaKnown RBP27.33■■□□□ 1.96
FDPS-201ENST00000356657 WDR97A6NE52 1622 aa27.3■■□□□ 1.96
FDPS-201ENST00000356657 SOGA1O94964 1423 aa27.29■■□□□ 1.96
FDPS-201ENST00000356657 ABCA10Q8WWZ4 1543 aa27.22■■□□□ 1.95
FDPS-201ENST00000356657 RAD54L2Q9Y4B4 1467 aa27.21■■□□□ 1.95
FDPS-201ENST00000356657 EIF4G3O43432 1585 aaKnown RBP27.14■■□□□ 1.94
FDPS-201ENST00000356657 DNAJC5Q9H3Z4 198 aa27.13■■□□□ 1.93
FDPS-201ENST00000356657 ZNF608Q9ULD9 1512 aaPredicted RBP27.13■■□□□ 1.93
FDPS-201ENST00000356657 TRIM41Q8WV44 630 aa27.1■■□□□ 1.93
FDPS-201ENST00000356657 ABCA5Q8WWZ7 1642 aa27.08■■□□□ 1.93
FDPS-201ENST00000356657 TDRD9Q8NDG6 1382 aaKnown RBP27.03■■□□□ 1.92
FDPS-201ENST00000356657 GAPVD1Q14C86 1478 aa27.03■■□□□ 1.92
FDPS-201ENST00000356657 AQRO60306 1485 aaKnown RBP eCLIP27.02■■□□□ 1.922e-7■■■■□ 26.3
FDPS-201ENST00000356657 GRIN2BQ13224 1484 aa27■■□□□ 1.91
FDPS-201ENST00000356657 PBRM1Q86U86 1689 aa26.98■■□□□ 1.91
FDPS-201ENST00000356657 KIF27Q86VH2 1401 aa26.98■■□□□ 1.91
FDPS-201ENST00000356657 CHIC1Q5VXU3 224 aa26.97■■□□□ 1.91
FDPS-201ENST00000356657 ERICH3Q5RHP9 1530 aa26.94■■□□□ 1.9
FDPS-201ENST00000356657 MAGI1Q96QZ7 1491 aaPredicted RBP26.92■■□□□ 1.9
FDPS-201ENST00000356657 SNAPC4Q5SXM2 1469 aa26.84■■□□□ 1.89
FDPS-201ENST00000356657 CUL7Q14999 1698 aa26.8■■□□□ 1.88
FDPS-201ENST00000356657 EEA1Q15075 1411 aa26.8■■□□□ 1.88
FDPS-201ENST00000356657 ADAMTS12P58397 1594 aa26.78■■□□□ 1.88
FDPS-201ENST00000356657 SYNJ2O15056 1496 aa26.78■■□□□ 1.88
FDPS-201ENST00000356657 OSCARQ8IYS5 282 aa26.75■■□□□ 1.87
FDPS-201ENST00000356657 FHAD1B1AJZ9 1412 aa26.75■■□□□ 1.87
FDPS-201ENST00000356657 IGF1RP08069 1367 aa26.73■■□□□ 1.87
FDPS-201ENST00000356657 CHD1O14646 1710 aa26.73■■□□□ 1.87
FDPS-201ENST00000356657 FBLN2P98095 1184 aa26.68■■□□□ 1.86
FDPS-201ENST00000356657 RUSC2Q8N2Y8 1516 aa26.67■■□□□ 1.86
FDPS-201ENST00000356657 CHMP7Q8WUX9 453 aaPredicted RBP26.65■■□□□ 1.86
FDPS-201ENST00000356657 GRIN2AQ12879 1464 aa26.63■■□□□ 1.85
FDPS-201ENST00000356657 CARMIL1Q5VZK9 1371 aa26.61■■□□□ 1.85
FDPS-201ENST00000356657 CSRNP3Q8WYN3 585 aa26.55■■□□□ 1.84
FDPS-201ENST00000356657 PRXQ9BXM0 1461 aa26.53■■□□□ 1.84
FDPS-201ENST00000356657 RAPGEF2Q9Y4G8 1499 aa26.53■■□□□ 1.84
FDPS-201ENST00000356657 NUP160Q12769 1436 aa26.51■■□□□ 1.83
FDPS-201ENST00000356657 CLASP1Q7Z460 1538 aa26.45■■□□□ 1.82
FDPS-201ENST00000356657 KIF21BO75037 1637 aa26.44■■□□□ 1.82
FDPS-201ENST00000356657 CEP170Q5SW79 1584 aa26.44■■□□□ 1.82
FDPS-201ENST00000356657 RIMBP3CA6NJZ7 1639 aa26.4■■□□□ 1.82
FDPS-201ENST00000356657 RIMBP3BA6NNM3 1639 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms