Protein–RNA interactions for Protein: P06748

NPM1, Nucleophosmin, humanhuman

Known RBP eCLIP

Length 294 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1P06748 NR2F2-AS1-202ENST00000557863 515 ntTSL 326.18■■□□□ 1.781e-323■■■■■ 28.5
NPM1P06748 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.341e-323■□□□□ 10.4
NPM1P06748 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC20.69■□□□□ 0.91e-323■■■■■ 28
NPM1P06748 NR2F2-AS1-203ENST00000558929 574 ntTSL 5 BASIC16.88■□□□□ 0.291e-323■■■■■ 28
NPM1P06748 SYCP2L-202ENST00000341041 3069 ntTSL 216.88■□□□□ 0.291e-323■□□□□ 10.4
NPM1P06748 NR2F2-AS1-201ENST00000502125 1930 ntTSL 2 BASIC16.86■□□□□ 0.291e-323■■■■■ 28
NPM1P06748 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.281e-323■□□□□ 10.4
NPM1P06748 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC13.26□□□□□ -0.291e-323■■■■■ 28
NPM1P06748 THEM7P-201ENST00000419556 672 ntBASIC11.83□□□□□ -0.521e-323■■■■■ 28.5
NPM1P06748 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC10.53□□□□□ -0.721e-323■■■■■ 28
NPM1P06748 MT-TP-201ENST00000387461 68 ntBASIC10.2□□□□□ -0.781e-323■■■□□ 19.1
NPM1P06748 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC31.79■■■□□ 2.682e-87■■□□□ 14.2
NPM1P06748 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.12e-87■■□□□ 14.2
NPM1P06748 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.62e-87■■□□□ 14.2
NPM1P06748 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC23.1■■□□□ 1.292e-87■■□□□ 14.2
NPM1P06748 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC21.27■■□□□ 12e-87■■□□□ 14.2
NPM1P06748 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.982e-87■■□□□ 14.2
NPM1P06748 SLC25A3-214ENST00000551123 1417 ntTSL 1 (best)19.59■□□□□ 0.732e-87■■□□□ 14.2
NPM1P06748 SLC25A3-203ENST00000401722 6087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.122e-87■■□□□ 14.2
NPM1P06748 SLC25A3-204ENST00000546766 3236 ntTSL 1 (best)14.19□□□□□ -0.142e-87■■□□□ 14.2
NPM1P06748 SNORA53-201ENST00000391141 249 ntBASIC8.45□□□□□ -1.062e-87■■□□□ 14.2
NPM1P06748 SGPL1-204ENST00000486993 537 ntTSL 1 (best)34.54■■■■□ 3.124e-73■■■■■ 67
NPM1P06748 SGPL1-202ENST00000373202 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.074e-73■■■■■ 67
NPM1P06748 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC15.99■□□□□ 0.152e-55■□□□□ 8.9
NPM1P06748 MALAT1-202ENST00000534336 8708 ntBASIC11.49□□□□□ -0.572e-55■□□□□ 8.9
NPM1P06748 RPS3-213ENST00000529285 550 ntTSL 532.95■■■□□ 2.873e-45■□□□□ 8.2
NPM1P06748 RPS3-220ENST00000534555 387 ntTSL 328.31■■■□□ 2.123e-45■□□□□ 8.2
NPM1P06748 RPS3-206ENST00000526248 771 ntTSL 526.83■■□□□ 1.893e-45■□□□□ 8.2
NPM1P06748 RPS3-201ENST00000278572 907 ntTSL 3 BASIC25.37■■□□□ 1.653e-45■□□□□ 8.2
NPM1P06748 RPS3-216ENST00000530721 796 ntTSL 321.98■■□□□ 1.113e-45■□□□□ 8.2
NPM1P06748 RPS3-218ENST00000532872 737 ntTSL 321.98■■□□□ 1.113e-45■□□□□ 8.2
NPM1P06748 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.823e-45■□□□□ 8.2
NPM1P06748 RPS3-208ENST00000527273 390 ntTSL 319.96■□□□□ 0.793e-45■□□□□ 8.2
NPM1P06748 RPS3-212ENST00000529173 1373 ntTSL 518.8■□□□□ 0.63e-45■□□□□ 8.2
NPM1P06748 RPS3-211ENST00000528847 639 ntTSL 518.35■□□□□ 0.533e-45■□□□□ 8.2
NPM1P06748 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.443e-45■□□□□ 8.2
NPM1P06748 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.273e-45■□□□□ 8.2
NPM1P06748 RPS3-202ENST00000422465 903 ntTSL 216.41■□□□□ 0.223e-45■□□□□ 8.2
NPM1P06748 RPS3-207ENST00000526608 710 ntTSL 5 BASIC15.97■□□□□ 0.153e-45■□□□□ 8.2
NPM1P06748 RPS3-219ENST00000534440 564 ntTSL 2 BASIC15.8■□□□□ 0.123e-45■□□□□ 8.2
NPM1P06748 RPS3-214ENST00000530164 1878 ntTSL 1 (best) BASIC15.65■□□□□ 0.13e-45■□□□□ 8.2
NPM1P06748 RPS3-210ENST00000528439 473 ntTSL 315.28■□□□□ 0.043e-45■□□□□ 8.2
NPM1P06748 SNORD15A-201ENST00000384214 148 ntBASIC12.7□□□□□ -0.383e-45■□□□□ 8.2
NPM1P06748 SNX5-206ENST00000469704 696 ntTSL 344.83■■■■■ 4.776e-41■□□□□ 10.1
NPM1P06748 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.756e-41■□□□□ 10.1
NPM1P06748 SNX5-203ENST00000419004 778 ntTSL 527.94■■■□□ 2.066e-41■□□□□ 10.1
NPM1P06748 SNX5-204ENST00000431277 840 ntTSL 526.64■■□□□ 1.866e-41■□□□□ 10.1
NPM1P06748 OVOL2-204ENST00000486776 550 ntTSL 323.35■■□□□ 1.336e-41■□□□□ 10.1
NPM1P06748 SNX5-214ENST00000490175 2025 ntTSL 1 (best)22.41■■□□□ 1.186e-41■□□□□ 10.1
NPM1P06748 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.056e-41■□□□□ 10.1
NPM1P06748 SNX5-207ENST00000474883 695 ntTSL 59.97□□□□□ -0.816e-41■□□□□ 10.1
NPM1P06748 SNORD17-201ENST00000390930 237 ntBASIC5.71□□□□□ -1.56e-41■□□□□ 10.1
NPM1P06748 HSP90AA1-210ENST00000560130 488 ntTSL 211.9□□□□□ -0.56e-37■■□□□ 12.8
NPM1P06748 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC22.9■■□□□ 1.265e-33■□□□□ 8.3
NPM1P06748 SNORA50.1-201ENST00000628590 135 ntBASIC20.4■□□□□ 0.865e-33■□□□□ 8.3
NPM1P06748 SNORA50C-201ENST00000408535 133 ntBASIC20.4■□□□□ 0.865e-33■□□□□ 8.3
NPM1P06748 HSP90AA1-204ENST00000554401 1710 ntTSL 1 (best)13.92□□□□□ -0.182e-32■■■■□ 21.7
NPM1P06748 NCL-209ENST00000484328 369 ntTSL 210.16□□□□□ -0.782e-32■■■□□ 16
NPM1P06748 WDR82-203ENST00000469000 587 ntTSL 528.49■■■□□ 2.152e-32■■■■■ 230.1
NPM1P06748 WDR82-202ENST00000463624 574 ntTSL 422.82■■□□□ 1.242e-32■■■■■ 230.1
NPM1P06748 WDR82-201ENST00000296490 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.172e-32■■■■■ 230.1
NPM1P06748 MIRLET7G-201ENST00000362280 84 ntBASIC2.83□□□□□ -1.962e-32■■■■■ 230.1
NPM1P06748 HSP90AA1-203ENST00000553585 581 ntTSL 312.45□□□□□ -0.423e-32■■■■■ 30.7
NPM1P06748 HSP90AA1-205ENST00000555662 429 ntTSL 210.67□□□□□ -0.73e-32■■■■■ 30.7
NPM1P06748 GAS5-209ENST00000430245 723 ntTSL 3 BASIC22.56■■□□□ 1.21e-27■■□□□ 12.8
NPM1P06748 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC17.67■□□□□ 0.421e-27■■□□□ 12.8
NPM1P06748 GAS5-203ENST00000416952 799 ntTSL 216.09■□□□□ 0.171e-27■■□□□ 12.8
NPM1P06748 GAS5-216ENST00000443799 897 ntTSL 516.04■□□□□ 0.161e-27■■□□□ 12.8
NPM1P06748 GAS5-214ENST00000436656 822 ntTSL 316.04■□□□□ 0.161e-27■■□□□ 12.8
NPM1P06748 GAS5-224ENST00000454068 688 ntTSL 5 BASIC15.72■□□□□ 0.111e-27■■□□□ 12.8
NPM1P06748 GAS5-210ENST00000431268 1698 ntTSL 214.5□□□□□ -0.091e-27■■□□□ 12.8
NPM1P06748 GAS5-229ENST00000458220 469 ntTSL 214.49□□□□□ -0.091e-27■■□□□ 12.8
NPM1P06748 GAS5-220ENST00000449589 712 ntTSL 313.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-219ENST00000449289 542 ntTSL 3 BASIC13.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-226ENST00000455838 632 ntTSL 213.26□□□□□ -0.291e-27■■□□□ 12.8
NPM1P06748 GAS5-211ENST00000432536 959 ntTSL 2 BASIC12.82□□□□□ -0.361e-27■■□□□ 12.8
NPM1P06748 GAS5-227ENST00000456293 583 ntTSL 311.88□□□□□ -0.511e-27■■□□□ 12.8
NPM1P06748 GAS5-204ENST00000421068 1060 ntTSL 211.25□□□□□ -0.611e-27■■□□□ 12.8
NPM1P06748 GAS5-228ENST00000456812 723 ntTSL 311.2□□□□□ -0.621e-27■■□□□ 12.8
NPM1P06748 GAS5-206ENST00000422183 745 ntTSL 210.81□□□□□ -0.681e-27■■□□□ 12.8
NPM1P06748 GAS5-201ENST00000412059 979 ntTSL 510.31□□□□□ -0.761e-27■■□□□ 12.8
NPM1P06748 GAS5-215ENST00000442067 1114 ntTSL 210.3□□□□□ -0.761e-27■■□□□ 12.8
NPM1P06748 GAS5-218ENST00000448718 565 ntTSL 2 BASIC9.97□□□□□ -0.811e-27■■□□□ 12.8
NPM1P06748 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC9.34□□□□□ -0.911e-27■■□□□ 12.8
NPM1P06748 GAS5-223ENST00000452197 483 ntTSL 3 BASIC8.96□□□□□ -0.981e-27■■□□□ 12.8
NPM1P06748 GAS5-208ENST00000425771 242 ntTSL 3 BASIC7.95□□□□□ -1.141e-27■■□□□ 12.8
NPM1P06748 GAS5-205ENST00000422008 497 ntTSL 37.23□□□□□ -1.251e-27■■□□□ 12.8
NPM1P06748 GAS5-213ENST00000436285 772 ntTSL 26.58□□□□□ -1.361e-27■■□□□ 12.8
NPM1P06748 CTC1-201ENST00000315684 7021 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.33e-25■■■■■ 32.4
NPM1P06748 MIR4449-201ENST00000578365 66 ntBASIC44.5■■■■■ 4.714e-23■□□□□ 8.9
NPM1P06748 DANCR-203ENST00000441504 336 ntTSL 229.83■■■□□ 2.374e-23■□□□□ 8.9
NPM1P06748 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC26.9■■□□□ 1.94e-23■□□□□ 8.9
NPM1P06748 RNU6-9-201ENST00000384776 107 ntBASIC7.57□□□□□ -1.21e-20■□□□□ 8.1
NPM1P06748 HBM-202ENST00000472539 592 ntTSL 534.16■■■■□ 3.062e-18■□□□□ 9.1
NPM1P06748 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.32e-18■□□□□ 9.1
NPM1P06748 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.72e-16■■■□□ 17.5
NPM1P06748 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC15.44■□□□□ 0.062e-16■■■□□ 17.5
NPM1P06748 SNORD3B-1-201ENST00000577988 758 ntBASIC22.67■■□□□ 1.223e-15■■■■■ 90.5
NPM1P06748 SNORD3B-1-203ENST00000631292 217 nt17.65■□□□□ 0.423e-15■■■■■ 90.5
NPM1P06748 SNORD3B-1-202ENST00000617128 218 nt17.22■□□□□ 0.353e-15■■■■■ 90.5
Retrieved 100 of 408 protein–RNA pairs in 22.2 ms