RNA–Protein interactions for RNA: ENST00000448874.5

PTMA-208, Transcript of prothymosin alpha, humanhuman

TSL 2

Gene PTMA, Length 1,108 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTMA-208ENST00000448874 NISCHQ9Y2I1 1504 aa41.64■■■■■ 4.26
PTMA-208ENST00000448874 CCDC180Q9P1Z9 1646 aa37.34■■■■□ 3.57
PTMA-208ENST00000448874 ABCC9O60706 1549 aa37.21■■■■□ 3.55
PTMA-208ENST00000448874 RB1CC1Q8TDY2 1594 aa35.47■■■■□ 3.27
PTMA-208ENST00000448874 NACADO15069 1562 aa35.25■■■■□ 3.23
PTMA-208ENST00000448874 DCAF8L2P0C7V8 631 aa35.05■■■■□ 3.2
PTMA-208ENST00000448874 MYO15BQ96JP2 1530 aa34.79■■■■□ 3.16
PTMA-208ENST00000448874 DNAJC5BQ9UF47 199 aa34.75■■■■□ 3.15
PTMA-208ENST00000448874 UNC13AQ9UPW8 1703 aa34.72■■■■□ 3.15
PTMA-208ENST00000448874 PABPN1Q86U42 306 aaKnown RBP eCLIP34.64■■■■□ 3.14
PTMA-208ENST00000448874 ZCCHC6Q5VYS8 1495 aaKnown RBP34.55■■■■□ 3.12
PTMA-208ENST00000448874 BICRAQ9NZM4 1560 aa34.44■■■■□ 3.1
PTMA-208ENST00000448874 DCAF1Q9Y4B6 1507 aa34.4■■■■□ 3.1
PTMA-208ENST00000448874 SCRIBQ14160 1630 aa34.04■■■■□ 3.04
PTMA-208ENST00000448874 SHROOM4Q9ULL8 1493 aa33.98■■■■□ 3.03
PTMA-208ENST00000448874 CC2D2AQ9P2K1 1620 aa33.63■■■□□ 2.97
PTMA-208ENST00000448874 EIF4G1Q04637 1599 aaKnown RBP33.59■■■□□ 2.97
PTMA-208ENST00000448874 CECR2Q9BXF3 1484 aa33.5■■■□□ 2.95
PTMA-208ENST00000448874 NCAPD3P42695 1498 aa32.52■■■□□ 2.8
PTMA-208ENST00000448874 SMARCA4P51532 1647 aa32.48■■■□□ 2.79
PTMA-208ENST00000448874 ATAD2BQ9ULI0 1458 aa32.45■■■□□ 2.79
PTMA-208ENST00000448874 SMARCA2P51531 1590 aa32.38■■■□□ 2.77
PTMA-208ENST00000448874 HMGXB3Q12766 1538 aa32.32■■■□□ 2.76
PTMA-208ENST00000448874 BAZ1AQ9NRL2 1556 aaPredicted RBP32.32■■■□□ 2.76
PTMA-208ENST00000448874 BAZ1BQ9UIG0 1483 aaKnown RBP32.16■■■□□ 2.74
PTMA-208ENST00000448874 PEG3Q9GZU2 1588 aa32.15■■■□□ 2.74
PTMA-208ENST00000448874 ERCC6Q03468 1493 aa32.13■■■□□ 2.73
PTMA-208ENST00000448874 MROH2BQ7Z745 1585 aa32.09■■■□□ 2.73
PTMA-208ENST00000448874 CUX2O14529 1486 aa32.03■■■□□ 2.72
PTMA-208ENST00000448874 NESP48681 1621 aa32■■■□□ 2.71
PTMA-208ENST00000448874 DNAJC5Q9H3Z4 198 aa31.82■■■□□ 2.68
PTMA-208ENST00000448874 LAMC3Q9Y6N6 1575 aa31.8■■■□□ 2.68
PTMA-208ENST00000448874 WIZO95785 1651 aa31.73■■■□□ 2.67
PTMA-208ENST00000448874 THOC2Q8NI27 1593 aaKnown RBP31.68■■■□□ 2.66
PTMA-208ENST00000448874 KIF21AQ7Z4S6 1674 aa31.63■■■□□ 2.65
PTMA-208ENST00000448874 PDS5BQ9NTI5 1447 aa31.58■■■□□ 2.65
PTMA-208ENST00000448874 CADPSQ9ULU8 1353 aa31.54■■■□□ 2.64
PTMA-208ENST00000448874 RSF1Q96T23 1441 aaPredicted RBP31.45■■■□□ 2.63
PTMA-208ENST00000448874 TOP2AP11388 1531 aaKnown RBP31.34■■■□□ 2.61
PTMA-208ENST00000448874 MRC2Q9UBG0 1479 aa31.33■■■□□ 2.61
PTMA-208ENST00000448874 WDR62O43379 1518 aa31.27■■■□□ 2.6
PTMA-208ENST00000448874 CEP164Q9UPV0 1460 aa31.23■■■□□ 2.59
PTMA-208ENST00000448874 CFTRP13569 1480 aa31.21■■■□□ 2.59
PTMA-208ENST00000448874 FANCD2Q9BXW9 1451 aa31.21■■■□□ 2.59
PTMA-208ENST00000448874 PRDM2Q13029 1718 aa30.98■■■□□ 2.55
PTMA-208ENST00000448874 CCDC88BA6NC98 1476 aa30.95■■■□□ 2.54
PTMA-208ENST00000448874 URB2Q14146 1524 aaKnown RBP30.94■■■□□ 2.54
PTMA-208ENST00000448874 TOPBP1Q92547 1522 aa30.63■■■□□ 2.49
PTMA-208ENST00000448874 IFT140Q96RY7 1462 aa30.6■■■□□ 2.49
PTMA-208ENST00000448874 ABCC8Q09428 1581 aa30.54■■■□□ 2.48
PTMA-208ENST00000448874 ZNF608Q9ULD9 1512 aaPredicted RBP30.54■■■□□ 2.48
PTMA-208ENST00000448874 DNMBPQ6XZF7 1577 aa30.54■■■□□ 2.48
PTMA-208ENST00000448874 OSCARQ8IYS5 282 aa30.53■■■□□ 2.48
PTMA-208ENST00000448874 TRIM41Q8WV44 630 aa30.5■■■□□ 2.47
PTMA-208ENST00000448874 EIF4G3O43432 1585 aaKnown RBP30.41■■■□□ 2.46
PTMA-208ENST00000448874 TARBP1Q13395 1621 aaKnown RBP30.36■■■□□ 2.45
PTMA-208ENST00000448874 POLA1P09884 1462 aaPredicted RBP30.32■■■□□ 2.44
PTMA-208ENST00000448874 AQRO60306 1485 aaKnown RBP eCLIP30.26■■■□□ 2.444e-20■■■■■ 37.2
PTMA-208ENST00000448874 RAD54L2Q9Y4B4 1467 aa30.21■■■□□ 2.43
PTMA-208ENST00000448874 RIMBP3CA6NJZ7 1639 aa30.19■■■□□ 2.42
PTMA-208ENST00000448874 RIMBP3BA6NNM3 1639 aa30.19■■■□□ 2.42
PTMA-208ENST00000448874 RIMBP3Q9UFD9 1639 aa30.19■■■□□ 2.42
PTMA-208ENST00000448874 CHD1O14646 1710 aa30.17■■■□□ 2.42
PTMA-208ENST00000448874 SOGA1O94964 1423 aa30.16■■■□□ 2.42
PTMA-208ENST00000448874 FGD5Q6ZNL6 1462 aa30.15■■■□□ 2.42
PTMA-208ENST00000448874 CUX1P39880 1505 aa30.15■■■□□ 2.42
PTMA-208ENST00000448874 SUPT5HO00267 1087 aaKnown RBP30.12■■■□□ 2.41
PTMA-208ENST00000448874 ARHGEF11O15085 1522 aa30.1■■■□□ 2.41
PTMA-208ENST00000448874 TDRD9Q8NDG6 1382 aaKnown RBP30.09■■■□□ 2.41
PTMA-208ENST00000448874 WDR97A6NE52 1622 aa30.06■■■□□ 2.4
PTMA-208ENST00000448874 FBLN2P98095 1184 aa30.03■■■□□ 2.4
PTMA-208ENST00000448874 SNAPC4Q5SXM2 1469 aa29.99■■■□□ 2.39
PTMA-208ENST00000448874 GRIN2BQ13224 1484 aa29.91■■■□□ 2.38
PTMA-208ENST00000448874 MAGI1Q96QZ7 1491 aaPredicted RBP29.9■■■□□ 2.38
PTMA-208ENST00000448874 PBRM1Q86U86 1689 aa29.85■■■□□ 2.37
PTMA-208ENST00000448874 CYB5RLQ6IPT4 315 aa29.82■■■□□ 2.36
PTMA-208ENST00000448874 CHMP7Q8WUX9 453 aaPredicted RBP29.82■■■□□ 2.36
PTMA-208ENST00000448874 ABCA10Q8WWZ4 1543 aa29.81■■■□□ 2.36
PTMA-208ENST00000448874 GAPVD1Q14C86 1478 aa29.81■■■□□ 2.36
PTMA-208ENST00000448874 ARAP1Q96P48 1450 aa29.81■■■□□ 2.36
PTMA-208ENST00000448874 CLASP1Q7Z460 1538 aa29.81■■■□□ 2.36
PTMA-208ENST00000448874 SYNJ1O43426 1573 aa29.8■■■□□ 2.36
PTMA-208ENST00000448874 SYNJ2O15056 1496 aa29.8■■■□□ 2.36
PTMA-208ENST00000448874 ABCA5Q8WWZ7 1642 aa29.78■■■□□ 2.36
PTMA-208ENST00000448874 AEBP2Q6ZN18 517 aaPredicted RBP29.72■■■□□ 2.35
PTMA-208ENST00000448874 BIVM-ERCC5R4GMW8 1640 aa29.71■■■□□ 2.35
PTMA-208ENST00000448874 TOP2BQ02880 1626 aa29.71■■■□□ 2.35
PTMA-208ENST00000448874 WRNQ14191 1432 aaPredicted RBP eCLIP29.7■■■□□ 2.34
PTMA-208ENST00000448874 ADAMTS12P58397 1594 aa29.56■■■□□ 2.32
PTMA-208ENST00000448874 GRIN2AQ12879 1464 aa29.54■■■□□ 2.32
PTMA-208ENST00000448874 TRHP20396 242 aaPredicted RBP29.47■■■□□ 2.31
PTMA-208ENST00000448874 CEP170Q5SW79 1584 aa29.44■■■□□ 2.3
PTMA-208ENST00000448874 ERICH3Q5RHP9 1530 aa29.44■■■□□ 2.3
PTMA-208ENST00000448874 FHAD1B1AJZ9 1412 aa29.44■■■□□ 2.3
PTMA-208ENST00000448874 NUP160Q12769 1436 aa29.42■■■□□ 2.3
PTMA-208ENST00000448874 ERCC6L2Q5T890 1561 aa29.35■■■□□ 2.29
PTMA-208ENST00000448874 SHROOM2Q13796 1616 aa29.3■■■□□ 2.28
PTMA-208ENST00000448874 RUSC2Q8N2Y8 1516 aa29.14■■■□□ 2.25
PTMA-208ENST00000448874 PRG4Q92954 1404 aaPredicted RBP29.11■■■□□ 2.25
PTMA-208ENST00000448874 KIF27Q86VH2 1401 aa29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms