Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
PRPF40AO75400 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.54■■■□□ 2.64
PRPF40AO75400 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
PRPF40AO75400 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
PRPF40AO75400 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.49■■■□□ 2.63
PRPF40AO75400 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
PRPF40AO75400 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
PRPF40AO75400 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
PRPF40AO75400 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.46■■■□□ 2.63
PRPF40AO75400 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
PRPF40AO75400 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
PRPF40AO75400 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
PRPF40AO75400 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
PRPF40AO75400 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
PRPF40AO75400 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
PRPF40AO75400 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
PRPF40AO75400 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
PRPF40AO75400 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.61
PRPF40AO75400 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.38■■■□□ 2.61
PRPF40AO75400 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC31.36■■■□□ 2.61
PRPF40AO75400 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
PRPF40AO75400 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PRPF40AO75400 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.36■■■□□ 2.61
PRPF40AO75400 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
PRPF40AO75400 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
PRPF40AO75400 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
PRPF40AO75400 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PRPF40AO75400 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PRPF40AO75400 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
PRPF40AO75400 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PRPF40AO75400 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.33■■■□□ 2.61
PRPF40AO75400 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.32■■■□□ 2.6
PRPF40AO75400 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
PRPF40AO75400 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
PRPF40AO75400 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
PRPF40AO75400 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
PRPF40AO75400 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.27■■■□□ 2.6
PRPF40AO75400 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
PRPF40AO75400 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
PRPF40AO75400 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
PRPF40AO75400 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.24■■■□□ 2.59
PRPF40AO75400 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
PRPF40AO75400 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.23■■■□□ 2.59
PRPF40AO75400 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
PRPF40AO75400 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.22■■■□□ 2.59
PRPF40AO75400 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC31.22■■■□□ 2.59
PRPF40AO75400 ST7-AS1-201ENST00000456775 1889 ntBASIC31.21■■■□□ 2.59
PRPF40AO75400 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
PRPF40AO75400 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
PRPF40AO75400 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PRPF40AO75400 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PRPF40AO75400 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.18■■■□□ 2.58
PRPF40AO75400 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PRPF40AO75400 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PRPF40AO75400 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
PRPF40AO75400 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
PRPF40AO75400 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.16■■■□□ 2.58
PRPF40AO75400 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
PRPF40AO75400 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
PRPF40AO75400 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
PRPF40AO75400 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PRPF40AO75400 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.13■■■□□ 2.57
PRPF40AO75400 AP002365.1-201ENST00000603448 772 ntBASIC31.13■■■□□ 2.57
PRPF40AO75400 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PRPF40AO75400 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.12■■■□□ 2.57
PRPF40AO75400 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.1■■■□□ 2.57
PRPF40AO75400 AL161658.1-201ENST00000623641 1967 ntBASIC31.1■■■□□ 2.57
PRPF40AO75400 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PRPF40AO75400 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.08■■■□□ 2.57
PRPF40AO75400 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.08■■■□□ 2.57
PRPF40AO75400 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PRPF40AO75400 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
PRPF40AO75400 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
PRPF40AO75400 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
PRPF40AO75400 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PRPF40AO75400 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
PRPF40AO75400 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
PRPF40AO75400 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.04■■■□□ 2.56
PRPF40AO75400 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PRPF40AO75400 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.01■■■□□ 2.56
PRPF40AO75400 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
PRPF40AO75400 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
PRPF40AO75400 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PRPF40AO75400 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PRPF40AO75400 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31■■■□□ 2.55
PRPF40AO75400 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
PRPF40AO75400 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
PRPF40AO75400 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
PRPF40AO75400 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.98■■■□□ 2.55
PRPF40AO75400 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.98■■■□□ 2.55
PRPF40AO75400 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
PRPF40AO75400 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
PRPF40AO75400 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.97■■■□□ 2.55
PRPF40AO75400 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
PRPF40AO75400 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
PRPF40AO75400 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.96■■■□□ 2.55
PRPF40AO75400 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
PRPF40AO75400 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.55
PRPF40AO75400 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
PRPF40AO75400 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms