Protein–RNA interactions for Protein: A6NGU7

LINC01546, Putative uncharacterized protein encoded by LINC01546, humanhuman

Predictions only

Length 62 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01546A6NGU7 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LINC01546A6NGU7 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC19.54■□□□□ 0.72
LINC01546A6NGU7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LINC01546A6NGU7 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
LINC01546A6NGU7 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LINC01546A6NGU7 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
LINC01546A6NGU7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.51■□□□□ 0.71
LINC01546A6NGU7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LINC01546A6NGU7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC01546A6NGU7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC01546A6NGU7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC01546A6NGU7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC01546A6NGU7 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC01546A6NGU7 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LINC01546A6NGU7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LINC01546A6NGU7 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LINC01546A6NGU7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC19.48■□□□□ 0.71
LINC01546A6NGU7 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC19.46■□□□□ 0.71
LINC01546A6NGU7 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.46■□□□□ 0.71
LINC01546A6NGU7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LINC01546A6NGU7 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LINC01546A6NGU7 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LINC01546A6NGU7 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LINC01546A6NGU7 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LINC01546A6NGU7 ST7-AS1-201ENST00000456775 1889 ntBASIC19.45■□□□□ 0.7
LINC01546A6NGU7 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC19.45■□□□□ 0.7
LINC01546A6NGU7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LINC01546A6NGU7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.44■□□□□ 0.7
LINC01546A6NGU7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
LINC01546A6NGU7 AC142086.6-201ENST00000621154 1765 ntBASIC19.43■□□□□ 0.7
LINC01546A6NGU7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.43■□□□□ 0.7
LINC01546A6NGU7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.43■□□□□ 0.7
LINC01546A6NGU7 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LINC01546A6NGU7 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LINC01546A6NGU7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LINC01546A6NGU7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LINC01546A6NGU7 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LINC01546A6NGU7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LINC01546A6NGU7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LINC01546A6NGU7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LINC01546A6NGU7 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC19.4■□□□□ 0.7
LINC01546A6NGU7 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LINC01546A6NGU7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LINC01546A6NGU7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
LINC01546A6NGU7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LINC01546A6NGU7 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LINC01546A6NGU7 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.37■□□□□ 0.69
LINC01546A6NGU7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LINC01546A6NGU7 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LINC01546A6NGU7 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LINC01546A6NGU7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LINC01546A6NGU7 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC19.35■□□□□ 0.69
LINC01546A6NGU7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LINC01546A6NGU7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LINC01546A6NGU7 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LINC01546A6NGU7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.34■□□□□ 0.69
LINC01546A6NGU7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
LINC01546A6NGU7 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
LINC01546A6NGU7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LINC01546A6NGU7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LINC01546A6NGU7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
LINC01546A6NGU7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LINC01546A6NGU7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LINC01546A6NGU7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LINC01546A6NGU7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LINC01546A6NGU7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LINC01546A6NGU7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
LINC01546A6NGU7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LINC01546A6NGU7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
LINC01546A6NGU7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LINC01546A6NGU7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LINC01546A6NGU7 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LINC01546A6NGU7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LINC01546A6NGU7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LINC01546A6NGU7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LINC01546A6NGU7 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LINC01546A6NGU7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LINC01546A6NGU7 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LINC01546A6NGU7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
LINC01546A6NGU7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LINC01546A6NGU7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LINC01546A6NGU7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LINC01546A6NGU7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LINC01546A6NGU7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.22■□□□□ 0.67
LINC01546A6NGU7 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LINC01546A6NGU7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LINC01546A6NGU7 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
LINC01546A6NGU7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LINC01546A6NGU7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
LINC01546A6NGU7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.21■□□□□ 0.67
LINC01546A6NGU7 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
LINC01546A6NGU7 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
LINC01546A6NGU7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LINC01546A6NGU7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LINC01546A6NGU7 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LINC01546A6NGU7 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LINC01546A6NGU7 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LINC01546A6NGU7 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LINC01546A6NGU7 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LINC01546A6NGU7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms