Protein–RNA interactions for Protein: Q6S5L8

SHC4, SHC-transforming protein 4, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC4Q6S5L8 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
SHC4Q6S5L8 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
SHC4Q6S5L8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SHC4Q6S5L8 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.61■■■□□ 2.65
SHC4Q6S5L8 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.6■■■□□ 2.65
SHC4Q6S5L8 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.59■■■□□ 2.65
SHC4Q6S5L8 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
SHC4Q6S5L8 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
SHC4Q6S5L8 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.57■■■□□ 2.64
SHC4Q6S5L8 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.55■■■□□ 2.64
SHC4Q6S5L8 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.54■■■□□ 2.64
SHC4Q6S5L8 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
SHC4Q6S5L8 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
SHC4Q6S5L8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.53■■■□□ 2.64
SHC4Q6S5L8 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
SHC4Q6S5L8 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
SHC4Q6S5L8 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SHC4Q6S5L8 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
SHC4Q6S5L8 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHC4Q6S5L8 DYNLL1-208ENST00000550178 581 ntBASIC31.47■■■□□ 2.63
SHC4Q6S5L8 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SHC4Q6S5L8 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.46■■■□□ 2.63
SHC4Q6S5L8 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SHC4Q6S5L8 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SHC4Q6S5L8 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.63
SHC4Q6S5L8 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
SHC4Q6S5L8 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SHC4Q6S5L8 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.42■■■□□ 2.62
SHC4Q6S5L8 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SHC4Q6S5L8 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SHC4Q6S5L8 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.4■■■□□ 2.62
SHC4Q6S5L8 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.4■■■□□ 2.62
SHC4Q6S5L8 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.39■■■□□ 2.62
SHC4Q6S5L8 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SHC4Q6S5L8 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SHC4Q6S5L8 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SHC4Q6S5L8 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SHC4Q6S5L8 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.35■■■□□ 2.61
SHC4Q6S5L8 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SHC4Q6S5L8 AC120057.4-201ENST00000624722 1615 ntBASIC31.35■■■□□ 2.61
SHC4Q6S5L8 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
SHC4Q6S5L8 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SHC4Q6S5L8 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SHC4Q6S5L8 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHC4Q6S5L8 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
SHC4Q6S5L8 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SHC4Q6S5L8 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
SHC4Q6S5L8 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.3■■■□□ 2.6
SHC4Q6S5L8 AL031258.1-201ENST00000623562 325 ntBASIC31.28■■■□□ 2.6
SHC4Q6S5L8 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
SHC4Q6S5L8 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
SHC4Q6S5L8 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.26■■■□□ 2.59
SHC4Q6S5L8 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.25■■■□□ 2.59
SHC4Q6S5L8 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.24■■■□□ 2.59
SHC4Q6S5L8 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SHC4Q6S5L8 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.23■■■□□ 2.59
SHC4Q6S5L8 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31.23■■■□□ 2.59
SHC4Q6S5L8 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.22■■■□□ 2.59
SHC4Q6S5L8 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.58
SHC4Q6S5L8 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
SHC4Q6S5L8 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHC4Q6S5L8 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHC4Q6S5L8 AP002365.1-201ENST00000603448 772 ntBASIC31.19■■■□□ 2.58
SHC4Q6S5L8 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHC4Q6S5L8 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SHC4Q6S5L8 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SHC4Q6S5L8 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.17■■■□□ 2.58
SHC4Q6S5L8 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.17■■■□□ 2.58
SHC4Q6S5L8 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.15■■■□□ 2.58
SHC4Q6S5L8 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SHC4Q6S5L8 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.14■■■□□ 2.57
SHC4Q6S5L8 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
SHC4Q6S5L8 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
SHC4Q6S5L8 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHC4Q6S5L8 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
SHC4Q6S5L8 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHC4Q6S5L8 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
SHC4Q6S5L8 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SHC4Q6S5L8 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
SHC4Q6S5L8 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHC4Q6S5L8 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31■■■□□ 2.55
SHC4Q6S5L8 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHC4Q6S5L8 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
SHC4Q6S5L8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHC4Q6S5L8 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHC4Q6S5L8 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHC4Q6S5L8 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHC4Q6S5L8 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.94■■■□□ 2.54
SHC4Q6S5L8 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
SHC4Q6S5L8 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
SHC4Q6S5L8 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
SHC4Q6S5L8 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.91■■■□□ 2.54
SHC4Q6S5L8 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.9■■■□□ 2.54
SHC4Q6S5L8 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.9■■■□□ 2.54
SHC4Q6S5L8 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHC4Q6S5L8 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHC4Q6S5L8 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHC4Q6S5L8 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SHC4Q6S5L8 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.89■■■□□ 2.54
SHC4Q6S5L8 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms