Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
KRT39Q6A163 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.17■■■□□ 2.42
KRT39Q6A163 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
KRT39Q6A163 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
KRT39Q6A163 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
KRT39Q6A163 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.11■■■□□ 2.41
KRT39Q6A163 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.07■■■□□ 2.4
KRT39Q6A163 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.06■■■□□ 2.4
KRT39Q6A163 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.06■■■□□ 2.4
KRT39Q6A163 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
KRT39Q6A163 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.04■■■□□ 2.4
KRT39Q6A163 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.04■■■□□ 2.4
KRT39Q6A163 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.04■■■□□ 2.4
KRT39Q6A163 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
KRT39Q6A163 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
KRT39Q6A163 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
KRT39Q6A163 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.01■■■□□ 2.39
KRT39Q6A163 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.01■■■□□ 2.39
KRT39Q6A163 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30■■■□□ 2.39
KRT39Q6A163 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
KRT39Q6A163 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30■■■□□ 2.39
KRT39Q6A163 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC29.98■■■□□ 2.39
KRT39Q6A163 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
KRT39Q6A163 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.94■■■□□ 2.38
KRT39Q6A163 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.93■■■□□ 2.38
KRT39Q6A163 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
KRT39Q6A163 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC29.92■■■□□ 2.38
KRT39Q6A163 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
KRT39Q6A163 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.91■■■□□ 2.38
KRT39Q6A163 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC29.9■■■□□ 2.38
KRT39Q6A163 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
KRT39Q6A163 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
KRT39Q6A163 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
KRT39Q6A163 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
KRT39Q6A163 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.85■■■□□ 2.37
KRT39Q6A163 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
KRT39Q6A163 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
KRT39Q6A163 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
KRT39Q6A163 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
KRT39Q6A163 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.81■■■□□ 2.36
KRT39Q6A163 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
KRT39Q6A163 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.81■■■□□ 2.36
KRT39Q6A163 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC29.81■■■□□ 2.36
KRT39Q6A163 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.8■■■□□ 2.36
KRT39Q6A163 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.8■■■□□ 2.36
KRT39Q6A163 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.8■■■□□ 2.36
KRT39Q6A163 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
KRT39Q6A163 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.78■■■□□ 2.36
KRT39Q6A163 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
KRT39Q6A163 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
KRT39Q6A163 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
KRT39Q6A163 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
KRT39Q6A163 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.36
KRT39Q6A163 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.76■■■□□ 2.35
KRT39Q6A163 AC120057.4-201ENST00000624722 1615 ntBASIC29.75■■■□□ 2.35
KRT39Q6A163 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.75■■■□□ 2.35
KRT39Q6A163 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
KRT39Q6A163 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
KRT39Q6A163 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
KRT39Q6A163 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
KRT39Q6A163 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
KRT39Q6A163 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
KRT39Q6A163 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.72■■■□□ 2.35
KRT39Q6A163 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
KRT39Q6A163 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
KRT39Q6A163 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
KRT39Q6A163 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC29.68■■■□□ 2.34
KRT39Q6A163 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
KRT39Q6A163 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.63■■■□□ 2.33
KRT39Q6A163 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
KRT39Q6A163 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
KRT39Q6A163 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
KRT39Q6A163 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
KRT39Q6A163 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
KRT39Q6A163 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
KRT39Q6A163 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
KRT39Q6A163 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
KRT39Q6A163 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
KRT39Q6A163 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
KRT39Q6A163 RARRES2P7-201ENST00000567349 469 ntBASIC29.54■■■□□ 2.32
KRT39Q6A163 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
KRT39Q6A163 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.52■■■□□ 2.32
KRT39Q6A163 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC29.52■■■□□ 2.32
KRT39Q6A163 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.52■■■□□ 2.32
KRT39Q6A163 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC29.52■■■□□ 2.32
KRT39Q6A163 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.52■■■□□ 2.32
KRT39Q6A163 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
KRT39Q6A163 ST7-205ENST00000393446 2114 ntTSL 5 BASIC29.49■■■□□ 2.31
KRT39Q6A163 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.49■■■□□ 2.31
KRT39Q6A163 AL133380.1-201ENST00000506013 324 ntBASIC29.48■■■□□ 2.31
KRT39Q6A163 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.46■■■□□ 2.31
KRT39Q6A163 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC29.46■■■□□ 2.31
KRT39Q6A163 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
KRT39Q6A163 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.43■■■□□ 2.3
KRT39Q6A163 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
KRT39Q6A163 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
KRT39Q6A163 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
KRT39Q6A163 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
KRT39Q6A163 SETD8P1-201ENST00000623146 1180 ntBASIC29.42■■■□□ 2.3
KRT39Q6A163 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms