Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.92■■■□□ 2.7
SF3A1Q15459 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC31.91■■■□□ 2.7
SF3A1Q15459 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC31.91■■■□□ 2.7
SF3A1Q15459 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
SF3A1Q15459 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.9■■■□□ 2.7
SF3A1Q15459 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
SF3A1Q15459 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.9■■■□□ 2.7
SF3A1Q15459 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SF3A1Q15459 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
SF3A1Q15459 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SF3A1Q15459 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SF3A1Q15459 DYNLL1-208ENST00000550178 581 ntBASIC31.85■■■□□ 2.69
SF3A1Q15459 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SF3A1Q15459 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
SF3A1Q15459 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SF3A1Q15459 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
SF3A1Q15459 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.82■■■□□ 2.68
SF3A1Q15459 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SF3A1Q15459 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.81■■■□□ 2.68
SF3A1Q15459 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.8■■■□□ 2.68
SF3A1Q15459 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.8■■■□□ 2.68
SF3A1Q15459 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
SF3A1Q15459 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.77■■■□□ 2.68
SF3A1Q15459 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.76■■■□□ 2.67
SF3A1Q15459 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SF3A1Q15459 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SF3A1Q15459 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
SF3A1Q15459 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
SF3A1Q15459 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SF3A1Q15459 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SF3A1Q15459 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SF3A1Q15459 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.68■■■□□ 2.66
SF3A1Q15459 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SF3A1Q15459 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SF3A1Q15459 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.67■■■□□ 2.66
SF3A1Q15459 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SF3A1Q15459 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SF3A1Q15459 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31.65■■■□□ 2.66
SF3A1Q15459 AL031258.1-201ENST00000623562 325 ntBASIC31.65■■■□□ 2.66
SF3A1Q15459 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SF3A1Q15459 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.64■■■□□ 2.66
SF3A1Q15459 AP002365.1-201ENST00000603448 772 ntBASIC31.64■■■□□ 2.66
SF3A1Q15459 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SF3A1Q15459 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SF3A1Q15459 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SF3A1Q15459 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.63■■■□□ 2.65
SF3A1Q15459 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SF3A1Q15459 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SF3A1Q15459 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.61■■■□□ 2.65
SF3A1Q15459 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SF3A1Q15459 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SF3A1Q15459 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.58■■■□□ 2.65
SF3A1Q15459 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SF3A1Q15459 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.57■■■□□ 2.64
SF3A1Q15459 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
SF3A1Q15459 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
SF3A1Q15459 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
SF3A1Q15459 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.55■■■□□ 2.64
SF3A1Q15459 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.54■■■□□ 2.64
SF3A1Q15459 AC120057.4-201ENST00000624722 1615 ntBASIC31.54■■■□□ 2.64
SF3A1Q15459 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.54■■■□□ 2.64
SF3A1Q15459 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.53■■■□□ 2.64
SF3A1Q15459 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SF3A1Q15459 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
SF3A1Q15459 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
SF3A1Q15459 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.48■■■□□ 2.63
SF3A1Q15459 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
SF3A1Q15459 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.47■■■□□ 2.63
SF3A1Q15459 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
SF3A1Q15459 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.44■■■□□ 2.62
SF3A1Q15459 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
SF3A1Q15459 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SF3A1Q15459 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.43■■■□□ 2.62
SF3A1Q15459 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SF3A1Q15459 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SF3A1Q15459 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.39■■■□□ 2.62
SF3A1Q15459 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.34■■■□□ 2.61
SF3A1Q15459 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SF3A1Q15459 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
SF3A1Q15459 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SF3A1Q15459 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SF3A1Q15459 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SF3A1Q15459 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SF3A1Q15459 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.3■■■□□ 2.6
SF3A1Q15459 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.29■■■□□ 2.6
SF3A1Q15459 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SF3A1Q15459 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SF3A1Q15459 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SF3A1Q15459 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
SF3A1Q15459 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
SF3A1Q15459 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
SF3A1Q15459 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SF3A1Q15459 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
SF3A1Q15459 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SF3A1Q15459 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SF3A1Q15459 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SF3A1Q15459 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SF3A1Q15459 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
SF3A1Q15459 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.21■■■□□ 2.59
SF3A1Q15459 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms