Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HLA-DMBP28068 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HLA-DMBP28068 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
HLA-DMBP28068 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC21.07■□□□□ 0.96
HLA-DMBP28068 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DMBP28068 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DMBP28068 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DMBP28068 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
HLA-DMBP28068 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC21.02■□□□□ 0.96
HLA-DMBP28068 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DMBP28068 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
HLA-DMBP28068 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.01■□□□□ 0.95
HLA-DMBP28068 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DMBP28068 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DMBP28068 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HLA-DMBP28068 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21■□□□□ 0.95
HLA-DMBP28068 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.99■□□□□ 0.95
HLA-DMBP28068 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DMBP28068 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DMBP28068 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DMBP28068 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HLA-DMBP28068 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DMBP28068 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HLA-DMBP28068 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HLA-DMBP28068 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DMBP28068 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC20.95■□□□□ 0.94
HLA-DMBP28068 AP002365.1-201ENST00000603448 772 ntBASIC20.95■□□□□ 0.94
HLA-DMBP28068 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DMBP28068 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
HLA-DMBP28068 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.93■□□□□ 0.94
HLA-DMBP28068 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HLA-DMBP28068 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HLA-DMBP28068 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HLA-DMBP28068 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HLA-DMBP28068 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.91■□□□□ 0.94
HLA-DMBP28068 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DMBP28068 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.9■□□□□ 0.94
HLA-DMBP28068 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DMBP28068 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.94
HLA-DMBP28068 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DMBP28068 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DMBP28068 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DMBP28068 AC120057.4-201ENST00000624722 1615 ntBASIC20.87■□□□□ 0.93
HLA-DMBP28068 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.87■□□□□ 0.93
HLA-DMBP28068 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC20.87■□□□□ 0.93
HLA-DMBP28068 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.87■□□□□ 0.93
HLA-DMBP28068 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DMBP28068 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
HLA-DMBP28068 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC20.85■□□□□ 0.93
HLA-DMBP28068 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.85■□□□□ 0.93
HLA-DMBP28068 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DMBP28068 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DMBP28068 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.84■□□□□ 0.93
HLA-DMBP28068 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DMBP28068 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
HLA-DMBP28068 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.83■□□□□ 0.93
HLA-DMBP28068 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
HLA-DMBP28068 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.82■□□□□ 0.92
HLA-DMBP28068 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC20.8■□□□□ 0.92
HLA-DMBP28068 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
HLA-DMBP28068 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HLA-DMBP28068 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HLA-DMBP28068 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HLA-DMBP28068 DYNLL1-208ENST00000550178 581 ntBASIC20.78■□□□□ 0.92
HLA-DMBP28068 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HLA-DMBP28068 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.78■□□□□ 0.92
HLA-DMBP28068 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HLA-DMBP28068 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.76■□□□□ 0.91
HLA-DMBP28068 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HLA-DMBP28068 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HLA-DMBP28068 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
HLA-DMBP28068 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.74■□□□□ 0.91
HLA-DMBP28068 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.74■□□□□ 0.91
HLA-DMBP28068 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DMBP28068 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DMBP28068 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DMBP28068 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC20.72■□□□□ 0.91
HLA-DMBP28068 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DMBP28068 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC20.71■□□□□ 0.91
HLA-DMBP28068 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DMBP28068 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DMBP28068 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.69■□□□□ 0.9
HLA-DMBP28068 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DMBP28068 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DMBP28068 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DMBP28068 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DMBP28068 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DMBP28068 ABCB10P1-201ENST00000614297 2181 ntBASIC20.66■□□□□ 0.9
HLA-DMBP28068 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DMBP28068 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DMBP28068 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HLA-DMBP28068 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DMBP28068 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DMBP28068 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-DMBP28068 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DMBP28068 AL031258.1-201ENST00000623562 325 ntBASIC20.62■□□□□ 0.89
HLA-DMBP28068 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DMBP28068 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DMBP28068 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DMBP28068 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms