Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HLA-DRB4X5D2U9 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
HLA-DRB4X5D2U9 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC21.44■■□□□ 1.02
HLA-DRB4X5D2U9 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
HLA-DRB4X5D2U9 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HLA-DRB4X5D2U9 ZNRF2P1-201ENST00000441407 443 ntBASIC21.44■■□□□ 1.02
HLA-DRB4X5D2U9 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
HLA-DRB4X5D2U9 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC21.41■■□□□ 1.02
HLA-DRB4X5D2U9 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
HLA-DRB4X5D2U9 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HLA-DRB4X5D2U9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
HLA-DRB4X5D2U9 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
HLA-DRB4X5D2U9 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HLA-DRB4X5D2U9 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HLA-DRB4X5D2U9 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC21.31■■□□□ 1
HLA-DRB4X5D2U9 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC21.31■■□□□ 1
HLA-DRB4X5D2U9 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC21.29■■□□□ 1
HLA-DRB4X5D2U9 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DRB4X5D2U9 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HLA-DRB4X5D2U9 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HLA-DRB4X5D2U9 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC21.22■□□□□ 0.99
HLA-DRB4X5D2U9 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HLA-DRB4X5D2U9 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HLA-DRB4X5D2U9 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC21.2■□□□□ 0.98
HLA-DRB4X5D2U9 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DRB4X5D2U9 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DRB4X5D2U9 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HLA-DRB4X5D2U9 ST7-202ENST00000323984 2142 ntTSL 5 BASIC21.19■□□□□ 0.98
HLA-DRB4X5D2U9 ST7-207ENST00000393449 2127 ntTSL 5 BASIC21.19■□□□□ 0.98
HLA-DRB4X5D2U9 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
HLA-DRB4X5D2U9 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HLA-DRB4X5D2U9 ST7-205ENST00000393446 2114 ntTSL 5 BASIC21.18■□□□□ 0.98
HLA-DRB4X5D2U9 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
HLA-DRB4X5D2U9 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HLA-DRB4X5D2U9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DRB4X5D2U9 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DRB4X5D2U9 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HLA-DRB4X5D2U9 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC21.1■□□□□ 0.97
HLA-DRB4X5D2U9 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
HLA-DRB4X5D2U9 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DRB4X5D2U9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC21.09■□□□□ 0.97
HLA-DRB4X5D2U9 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HLA-DRB4X5D2U9 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
HLA-DRB4X5D2U9 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
HLA-DRB4X5D2U9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC21.06■□□□□ 0.96
HLA-DRB4X5D2U9 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HLA-DRB4X5D2U9 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC21.05■□□□□ 0.96
HLA-DRB4X5D2U9 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DRB4X5D2U9 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DRB4X5D2U9 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HLA-DRB4X5D2U9 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HLA-DRB4X5D2U9 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DRB4X5D2U9 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HLA-DRB4X5D2U9 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HLA-DRB4X5D2U9 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DRB4X5D2U9 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DRB4X5D2U9 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HLA-DRB4X5D2U9 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DRB4X5D2U9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HLA-DRB4X5D2U9 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DRB4X5D2U9 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DRB4X5D2U9 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DRB4X5D2U9 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC20.95■□□□□ 0.94
HLA-DRB4X5D2U9 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DRB4X5D2U9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DRB4X5D2U9 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DRB4X5D2U9 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HLA-DRB4X5D2U9 AP002365.1-201ENST00000603448 772 ntBASIC20.94■□□□□ 0.94
HLA-DRB4X5D2U9 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HLA-DRB4X5D2U9 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HLA-DRB4X5D2U9 DYNLL1-208ENST00000550178 581 ntBASIC20.92■□□□□ 0.94
HLA-DRB4X5D2U9 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HLA-DRB4X5D2U9 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
HLA-DRB4X5D2U9 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.91■□□□□ 0.94
HLA-DRB4X5D2U9 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HLA-DRB4X5D2U9 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DRB4X5D2U9 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DRB4X5D2U9 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HLA-DRB4X5D2U9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DRB4X5D2U9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
HLA-DRB4X5D2U9 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC20.86■□□□□ 0.93
HLA-DRB4X5D2U9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.86■□□□□ 0.93
HLA-DRB4X5D2U9 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC20.85■□□□□ 0.93
HLA-DRB4X5D2U9 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.85■□□□□ 0.93
HLA-DRB4X5D2U9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.84■□□□□ 0.93
HLA-DRB4X5D2U9 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DRB4X5D2U9 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.84■□□□□ 0.93
HLA-DRB4X5D2U9 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DRB4X5D2U9 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DRB4X5D2U9 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
HLA-DRB4X5D2U9 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC20.82■□□□□ 0.92
HLA-DRB4X5D2U9 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
HLA-DRB4X5D2U9 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DRB4X5D2U9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
HLA-DRB4X5D2U9 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
HLA-DRB4X5D2U9 AL031258.1-201ENST00000623562 325 ntBASIC20.77■□□□□ 0.92
HLA-DRB4X5D2U9 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HLA-DRB4X5D2U9 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HLA-DRB4X5D2U9 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.76■□□□□ 0.91
HLA-DRB4X5D2U9 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms