Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC38.15■■■■□ 3.7
RTF1Q92541 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
RTF1Q92541 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
RTF1Q92541 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.68
RTF1Q92541 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC38.07■■■■□ 3.68
RTF1Q92541 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC37.98■■■■□ 3.67
RTF1Q92541 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC37.97■■■■□ 3.67
RTF1Q92541 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC37.95■■■■□ 3.67
RTF1Q92541 AL031258.1-201ENST00000623562 325 ntBASIC37.94■■■■□ 3.66
RTF1Q92541 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC37.93■■■■□ 3.66
RTF1Q92541 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC37.92■■■■□ 3.66
RTF1Q92541 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC37.91■■■■□ 3.66
RTF1Q92541 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
RTF1Q92541 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
RTF1Q92541 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC37.86■■■■□ 3.65
RTF1Q92541 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC37.85■■■■□ 3.65
RTF1Q92541 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC37.83■■■■□ 3.65
RTF1Q92541 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC37.83■■■■□ 3.65
RTF1Q92541 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC37.83■■■■□ 3.65
RTF1Q92541 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
RTF1Q92541 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
RTF1Q92541 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC37.8■■■■□ 3.64
RTF1Q92541 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC37.8■■■■□ 3.64
RTF1Q92541 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC37.76■■■■□ 3.64
RTF1Q92541 AC145285.7-201ENST00000614819 1539 ntBASIC37.72■■■■□ 3.63
RTF1Q92541 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
RTF1Q92541 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC37.66■■■■□ 3.62
RTF1Q92541 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC37.66■■■■□ 3.62
RTF1Q92541 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
RTF1Q92541 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC37.64■■■■□ 3.62
RTF1Q92541 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC37.62■■■■□ 3.61
RTF1Q92541 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC37.62■■■■□ 3.61
RTF1Q92541 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
RTF1Q92541 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC37.58■■■■□ 3.61
RTF1Q92541 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC37.56■■■■□ 3.6
RTF1Q92541 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
RTF1Q92541 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC37.51■■■■□ 3.6
RTF1Q92541 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC37.51■■■■□ 3.6
RTF1Q92541 EBPL-203ENST00000378270 579 ntTSL 2 BASIC37.49■■■■□ 3.59
RTF1Q92541 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC37.45■■■■□ 3.59
RTF1Q92541 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC37.44■■■■□ 3.58
RTF1Q92541 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC37.43■■■■□ 3.58
RTF1Q92541 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
RTF1Q92541 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC37.42■■■■□ 3.58
RTF1Q92541 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC37.41■■■■□ 3.58
RTF1Q92541 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC37.41■■■■□ 3.58
RTF1Q92541 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC37.37■■■■□ 3.57
RTF1Q92541 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC37.36■■■■□ 3.57
RTF1Q92541 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC37.32■■■■□ 3.56
RTF1Q92541 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC37.32■■■■□ 3.56
RTF1Q92541 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC37.29■■■■□ 3.56
RTF1Q92541 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC37.26■■■■□ 3.56
RTF1Q92541 MVK-208ENST00000539696 608 ntTSL 5 BASIC37.26■■■■□ 3.56
RTF1Q92541 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC37.25■■■■□ 3.55
RTF1Q92541 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC37.2■■■■□ 3.55
RTF1Q92541 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC37.18■■■■□ 3.54
RTF1Q92541 RARRES2P7-201ENST00000567349 469 ntBASIC37.18■■■■□ 3.54
RTF1Q92541 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC37.16■■■■□ 3.54
RTF1Q92541 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC37.15■■■■□ 3.54
RTF1Q92541 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.54
RTF1Q92541 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC37.13■■■■□ 3.53
RTF1Q92541 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC37.12■■■■□ 3.53
RTF1Q92541 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC37.12■■■■□ 3.53
RTF1Q92541 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC37.11■■■■□ 3.53
RTF1Q92541 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC37.1■■■■□ 3.53
RTF1Q92541 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC37.1■■■■□ 3.53
RTF1Q92541 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC37.1■■■■□ 3.53
RTF1Q92541 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
RTF1Q92541 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC37.06■■■■□ 3.52
RTF1Q92541 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC37.05■■■■□ 3.52
RTF1Q92541 KLF16-203ENST00000592313 508 ntTSL 3 BASIC37.05■■■■□ 3.52
RTF1Q92541 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC37.04■■■■□ 3.52
RTF1Q92541 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC37■■■■□ 3.51
RTF1Q92541 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC37■■■■□ 3.51
RTF1Q92541 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC36.99■■■■□ 3.51
RTF1Q92541 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC36.98■■■■□ 3.51
RTF1Q92541 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
RTF1Q92541 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC36.96■■■■□ 3.51
RTF1Q92541 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC36.94■■■■□ 3.5
RTF1Q92541 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC36.93■■■■□ 3.5
RTF1Q92541 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC36.92■■■■□ 3.5
RTF1Q92541 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC36.92■■■■□ 3.5
RTF1Q92541 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC36.91■■■■□ 3.5
RTF1Q92541 SETD8P1-201ENST00000623146 1180 ntBASIC36.9■■■■□ 3.5
RTF1Q92541 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
RTF1Q92541 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
RTF1Q92541 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC36.84■■■■□ 3.49
RTF1Q92541 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC36.81■■■■□ 3.48
RTF1Q92541 AC097358.2-201ENST00000607541 1159 ntBASIC36.81■■■■□ 3.48
RTF1Q92541 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
RTF1Q92541 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC36.8■■■■□ 3.48
RTF1Q92541 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC36.79■■■■□ 3.48
RTF1Q92541 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC36.78■■■■□ 3.48
RTF1Q92541 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC36.77■■■■□ 3.48
RTF1Q92541 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC36.74■■■■□ 3.47
RTF1Q92541 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC36.72■■■■□ 3.47
RTF1Q92541 AC136428.2-201ENST00000563187 214 ntBASIC36.72■■■■□ 3.47
RTF1Q92541 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
RTF1Q92541 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC36.71■■■■□ 3.47
RTF1Q92541 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC36.68■■■■□ 3.46
Retrieved 100 of 98,524 protein–RNA pairs in 885.3 ms