Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.56■■■□□ 2.64
CCDC40Q4G0X9 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.56■■■□□ 2.64
CCDC40Q4G0X9 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC40Q4G0X9 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC40Q4G0X9 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC40Q4G0X9 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CCDC40Q4G0X9 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
CCDC40Q4G0X9 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
CCDC40Q4G0X9 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC40Q4G0X9 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC40Q4G0X9 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC40Q4G0X9 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC40Q4G0X9 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC40Q4G0X9 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
CCDC40Q4G0X9 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC40Q4G0X9 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
CCDC40Q4G0X9 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC40Q4G0X9 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CCDC40Q4G0X9 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC40Q4G0X9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC40Q4G0X9 AC006077.2-201ENST00000623591 457 ntBASIC31.26■■■□□ 2.59
CCDC40Q4G0X9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC40Q4G0X9 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC40Q4G0X9 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC40Q4G0X9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC40Q4G0X9 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.15■■■□□ 2.58
CCDC40Q4G0X9 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC40Q4G0X9 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC40Q4G0X9 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
CCDC40Q4G0X9 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.13■■■□□ 2.57
CCDC40Q4G0X9 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.13■■■□□ 2.57
CCDC40Q4G0X9 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.11■■■□□ 2.57
CCDC40Q4G0X9 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC40Q4G0X9 ZNRF2P1-201ENST00000441407 443 ntBASIC31.05■■■□□ 2.56
CCDC40Q4G0X9 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.04■■■□□ 2.56
CCDC40Q4G0X9 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.04■■■□□ 2.56
CCDC40Q4G0X9 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC40Q4G0X9 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC40Q4G0X9 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC40Q4G0X9 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC40Q4G0X9 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC40Q4G0X9 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.54
CCDC40Q4G0X9 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CCDC40Q4G0X9 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CCDC40Q4G0X9 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.94■■■□□ 2.54
CCDC40Q4G0X9 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CCDC40Q4G0X9 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.91■■■□□ 2.54
CCDC40Q4G0X9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.91■■■□□ 2.54
CCDC40Q4G0X9 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CCDC40Q4G0X9 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CCDC40Q4G0X9 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CCDC40Q4G0X9 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
CCDC40Q4G0X9 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.86■■■□□ 2.53
CCDC40Q4G0X9 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC40Q4G0X9 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC40Q4G0X9 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
CCDC40Q4G0X9 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC40Q4G0X9 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC40Q4G0X9 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC40Q4G0X9 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.79■■■□□ 2.52
CCDC40Q4G0X9 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CCDC40Q4G0X9 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.78■■■□□ 2.52
CCDC40Q4G0X9 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.77■■■□□ 2.52
CCDC40Q4G0X9 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CCDC40Q4G0X9 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.76■■■□□ 2.51
CCDC40Q4G0X9 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CCDC40Q4G0X9 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CCDC40Q4G0X9 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CCDC40Q4G0X9 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.73■■■□□ 2.51
CCDC40Q4G0X9 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC40Q4G0X9 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
CCDC40Q4G0X9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.7■■■□□ 2.51
CCDC40Q4G0X9 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC40Q4G0X9 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC40Q4G0X9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.69■■■□□ 2.5
CCDC40Q4G0X9 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC40Q4G0X9 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC40Q4G0X9 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC40Q4G0X9 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC40Q4G0X9 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.62■■■□□ 2.49
CCDC40Q4G0X9 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC40Q4G0X9 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.6■■■□□ 2.49
CCDC40Q4G0X9 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC40Q4G0X9 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
CCDC40Q4G0X9 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC40Q4G0X9 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC40Q4G0X9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.57■■■□□ 2.48
CCDC40Q4G0X9 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
CCDC40Q4G0X9 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.56■■■□□ 2.48
CCDC40Q4G0X9 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
CCDC40Q4G0X9 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.53■■■□□ 2.48
CCDC40Q4G0X9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
CCDC40Q4G0X9 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
CCDC40Q4G0X9 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CCDC40Q4G0X9 DYNLL1-208ENST00000550178 581 ntBASIC30.51■■■□□ 2.47
CCDC40Q4G0X9 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC40Q4G0X9 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
CCDC40Q4G0X9 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
CCDC40Q4G0X9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC40Q4G0X9 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.47■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms