Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CBX4O00257 AC145285.7-201ENST00000614819 1539 ntBASIC29.52■■■□□ 2.32
CBX4O00257 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC29.51■■■□□ 2.31
CBX4O00257 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CBX4O00257 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CBX4O00257 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC29.5■■■□□ 2.31
CBX4O00257 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.5■■■□□ 2.31
CBX4O00257 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
CBX4O00257 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
CBX4O00257 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
CBX4O00257 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC29.45■■■□□ 2.31
CBX4O00257 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CBX4O00257 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CBX4O00257 DYNLL1-208ENST00000550178 581 ntBASIC29.44■■■□□ 2.3
CBX4O00257 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
CBX4O00257 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.41■■■□□ 2.3
CBX4O00257 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC29.38■■■□□ 2.29
CBX4O00257 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC29.38■■■□□ 2.29
CBX4O00257 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC29.38■■■□□ 2.29
CBX4O00257 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC29.37■■■□□ 2.29
CBX4O00257 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CBX4O00257 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CBX4O00257 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.36■■■□□ 2.29
CBX4O00257 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
CBX4O00257 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC29.34■■■□□ 2.29
CBX4O00257 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.33■■■□□ 2.29
CBX4O00257 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CBX4O00257 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
CBX4O00257 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CBX4O00257 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
CBX4O00257 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
CBX4O00257 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC29.28■■■□□ 2.28
CBX4O00257 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC29.28■■■□□ 2.28
CBX4O00257 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC29.26■■■□□ 2.27
CBX4O00257 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CBX4O00257 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC29.23■■■□□ 2.27
CBX4O00257 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.21■■■□□ 2.27
CBX4O00257 AL031258.1-201ENST00000623562 325 ntBASIC29.21■■■□□ 2.27
CBX4O00257 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.21■■■□□ 2.27
CBX4O00257 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
CBX4O00257 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
CBX4O00257 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CBX4O00257 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
CBX4O00257 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
CBX4O00257 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
CBX4O00257 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
CBX4O00257 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
CBX4O00257 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.07■■■□□ 2.24
CBX4O00257 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC29.03■■■□□ 2.24
CBX4O00257 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
CBX4O00257 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.96■■■□□ 2.23
CBX4O00257 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
CBX4O00257 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.93■■■□□ 2.22
CBX4O00257 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.93■■■□□ 2.22
CBX4O00257 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.93■■■□□ 2.22
CBX4O00257 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.9■■■□□ 2.22
CBX4O00257 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.89■■■□□ 2.21
CBX4O00257 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC28.88■■■□□ 2.21
CBX4O00257 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC28.88■■■□□ 2.21
CBX4O00257 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
CBX4O00257 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
CBX4O00257 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.87■■■□□ 2.21
CBX4O00257 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
CBX4O00257 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.85■■■□□ 2.21
CBX4O00257 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.84■■■□□ 2.21
CBX4O00257 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CBX4O00257 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
CBX4O00257 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CBX4O00257 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC28.79■■■□□ 2.2
CBX4O00257 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC28.78■■■□□ 2.2
CBX4O00257 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
CBX4O00257 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC28.74■■■□□ 2.19
CBX4O00257 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.73■■■□□ 2.19
CBX4O00257 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
CBX4O00257 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
CBX4O00257 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
CBX4O00257 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CBX4O00257 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CBX4O00257 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CBX4O00257 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CBX4O00257 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC28.68■■■□□ 2.18
CBX4O00257 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.63■■■□□ 2.17
CBX4O00257 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CBX4O00257 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC28.62■■■□□ 2.17
CBX4O00257 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.62■■■□□ 2.17
CBX4O00257 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC28.6■■■□□ 2.17
CBX4O00257 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC28.6■■■□□ 2.17
CBX4O00257 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.59■■■□□ 2.17
CBX4O00257 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CBX4O00257 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CBX4O00257 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CBX4O00257 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
CBX4O00257 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CBX4O00257 RARRES2P7-201ENST00000567349 469 ntBASIC28.55■■■□□ 2.16
CBX4O00257 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.55■■■□□ 2.16
CBX4O00257 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CBX4O00257 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CBX4O00257 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
CBX4O00257 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.5■■■□□ 2.15
CBX4O00257 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms