Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.05■■■■□ 3.2
CBX4O00257 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
CBX4O00257 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.04■■■■□ 3.04
CBX4O00257 AL356512.1-201ENST00000607453 1739 ntBASIC34.02■■■■□ 3.04
CBX4O00257 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
CBX4O00257 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
CBX4O00257 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.78■■■■□ 3
CBX4O00257 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.35■■■□□ 2.93
CBX4O00257 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.15■■■□□ 2.9
CBX4O00257 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.13■■■□□ 2.89
CBX4O00257 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.08■■■□□ 2.89
CBX4O00257 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.84■■■□□ 2.85
CBX4O00257 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.77■■■□□ 2.84
CBX4O00257 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.71■■■□□ 2.83
CBX4O00257 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.55■■■□□ 2.8
CBX4O00257 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CBX4O00257 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
CBX4O00257 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.39■■■□□ 2.78
CBX4O00257 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.34■■■□□ 2.77
CBX4O00257 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.28■■■□□ 2.76
CBX4O00257 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.12■■■□□ 2.73
CBX4O00257 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
CBX4O00257 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CBX4O00257 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
CBX4O00257 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CBX4O00257 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
CBX4O00257 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CBX4O00257 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CBX4O00257 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CBX4O00257 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CBX4O00257 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.47■■■□□ 2.63
CBX4O00257 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CBX4O00257 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.38■■■□□ 2.61
CBX4O00257 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.35■■■□□ 2.61
CBX4O00257 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
CBX4O00257 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.31■■■□□ 2.6
CBX4O00257 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CBX4O00257 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.23■■■□□ 2.59
CBX4O00257 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
CBX4O00257 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
CBX4O00257 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CBX4O00257 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.13■■■□□ 2.57
CBX4O00257 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CBX4O00257 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CBX4O00257 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
CBX4O00257 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CBX4O00257 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.96■■■□□ 2.55
CBX4O00257 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.54
CBX4O00257 AC015813.7-201ENST00000623294 581 ntBASIC30.85■■■□□ 2.53
CBX4O00257 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CBX4O00257 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CBX4O00257 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.69■■■□□ 2.5
CBX4O00257 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CBX4O00257 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.64■■■□□ 2.5
CBX4O00257 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.64■■■□□ 2.5
CBX4O00257 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.61■■■□□ 2.49
CBX4O00257 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
CBX4O00257 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CBX4O00257 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.53■■■□□ 2.48
CBX4O00257 AC006077.2-201ENST00000623591 457 ntBASIC30.45■■■□□ 2.47
CBX4O00257 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CBX4O00257 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CBX4O00257 ZNRF2P1-201ENST00000441407 443 ntBASIC30.33■■■□□ 2.45
CBX4O00257 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CBX4O00257 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.27■■■□□ 2.44
CBX4O00257 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CBX4O00257 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
CBX4O00257 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CBX4O00257 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CBX4O00257 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CBX4O00257 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
CBX4O00257 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CBX4O00257 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CBX4O00257 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CBX4O00257 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
CBX4O00257 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CBX4O00257 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
CBX4O00257 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
CBX4O00257 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CBX4O00257 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.86■■■□□ 2.37
CBX4O00257 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CBX4O00257 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CBX4O00257 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.83■■■□□ 2.37
CBX4O00257 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
CBX4O00257 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
CBX4O00257 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
CBX4O00257 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CBX4O00257 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
CBX4O00257 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.76■■■□□ 2.35
CBX4O00257 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.76■■■□□ 2.35
CBX4O00257 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.66■■■□□ 2.34
CBX4O00257 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.65■■■□□ 2.34
CBX4O00257 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.65■■■□□ 2.34
CBX4O00257 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.64■■■□□ 2.33
CBX4O00257 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CBX4O00257 AP002365.1-201ENST00000603448 772 ntBASIC29.62■■■□□ 2.33
CBX4O00257 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
CBX4O00257 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CBX4O00257 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.56■■■□□ 2.32
CBX4O00257 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.55■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms