Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCNAP12004 AC008813.1-201ENST00000536597 885 ntBASIC23.94■■□□□ 1.42
PCNAP12004 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
PCNAP12004 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCNAP12004 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.93■■□□□ 1.42
PCNAP12004 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCNAP12004 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
PCNAP12004 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCNAP12004 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCNAP12004 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.93■■□□□ 1.42
PCNAP12004 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.93■■□□□ 1.42
PCNAP12004 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCNAP12004 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCNAP12004 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.92■■□□□ 1.42
PCNAP12004 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
PCNAP12004 MIR7108-201ENST00000614319 87 ntBASIC23.92■■□□□ 1.42
PCNAP12004 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.92■■□□□ 1.42
PCNAP12004 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
PCNAP12004 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
PCNAP12004 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PCNAP12004 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.91■■□□□ 1.42
PCNAP12004 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.91■■□□□ 1.42
PCNAP12004 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PCNAP12004 AL449106.1-201ENST00000608517 1980 ntBASIC23.91■■□□□ 1.42
PCNAP12004 MIR3648-2-201ENST00000581792 180 ntBASIC23.9■■□□□ 1.42
PCNAP12004 MIR3648-1-201ENST00000615959 180 ntBASIC23.9■■□□□ 1.42
PCNAP12004 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.9■■□□□ 1.42
PCNAP12004 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.89■■□□□ 1.42
PCNAP12004 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PCNAP12004 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PCNAP12004 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCNAP12004 HLA-V-202ENST00000446817 847 ntBASIC23.89■■□□□ 1.41
PCNAP12004 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
PCNAP12004 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PCNAP12004 WHAMMP3-201ENST00000611636 1609 ntBASIC23.88■■□□□ 1.41
PCNAP12004 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PCNAP12004 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCNAP12004 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCNAP12004 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCNAP12004 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.87■■□□□ 1.41
PCNAP12004 AC016575.1-201ENST00000607026 382 ntBASIC23.87■■□□□ 1.41
PCNAP12004 MIR219A2-201ENST00000608502 1504 ntBASIC23.87■■□□□ 1.41
PCNAP12004 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
PCNAP12004 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.87■■□□□ 1.41
PCNAP12004 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PCNAP12004 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.86■■□□□ 1.41
PCNAP12004 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.86■■□□□ 1.41
PCNAP12004 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.86■■□□□ 1.41
PCNAP12004 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.85■■□□□ 1.41
PCNAP12004 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCNAP12004 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.85■■□□□ 1.41
PCNAP12004 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PCNAP12004 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
PCNAP12004 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.85■■□□□ 1.41
PCNAP12004 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
PCNAP12004 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCNAP12004 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.84■■□□□ 1.41
PCNAP12004 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCNAP12004 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PCNAP12004 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PCNAP12004 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCNAP12004 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCNAP12004 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.83■■□□□ 1.41
PCNAP12004 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
PCNAP12004 AC148477.6-201ENST00000623746 465 ntBASIC23.83■■□□□ 1.41
PCNAP12004 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.83■■□□□ 1.41
PCNAP12004 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
PCNAP12004 AP004609.3-201ENST00000610705 1884 ntBASIC23.83■■□□□ 1.4
PCNAP12004 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.83■■□□□ 1.4
PCNAP12004 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCNAP12004 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCNAP12004 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCNAP12004 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.82■■□□□ 1.4
PCNAP12004 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCNAP12004 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCNAP12004 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
PCNAP12004 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCNAP12004 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCNAP12004 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCNAP12004 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCNAP12004 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.81■■□□□ 1.4
PCNAP12004 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.81■■□□□ 1.4
PCNAP12004 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCNAP12004 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
PCNAP12004 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.8■■□□□ 1.4
PCNAP12004 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCNAP12004 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCNAP12004 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.79■■□□□ 1.4
PCNAP12004 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCNAP12004 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCNAP12004 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCNAP12004 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.78■■□□□ 1.4
PCNAP12004 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCNAP12004 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCNAP12004 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
PCNAP12004 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.77■■□□□ 1.4
PCNAP12004 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.77■■□□□ 1.4
PCNAP12004 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCNAP12004 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCNAP12004 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms