Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
RIPK4P57078 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC32.95■■■□□ 2.87
RIPK4P57078 MED25-210ENST00000612854 801 ntTSL 5 BASIC32.95■■■□□ 2.87
RIPK4P57078 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
RIPK4P57078 MED25-214ENST00000622402 642 ntTSL 5 BASIC32.95■■■□□ 2.87
RIPK4P57078 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
RIPK4P57078 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC32.94■■■□□ 2.86
RIPK4P57078 HSD17B1P1-201ENST00000590052 955 ntBASIC32.94■■■□□ 2.86
RIPK4P57078 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC32.94■■■□□ 2.86
RIPK4P57078 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
RIPK4P57078 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC32.94■■■□□ 2.86
RIPK4P57078 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC32.93■■■□□ 2.86
RIPK4P57078 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
RIPK4P57078 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.93■■■□□ 2.86
RIPK4P57078 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
RIPK4P57078 CEP120-209ENST00000515110 606 ntTSL 3 BASIC32.92■■■□□ 2.86
RIPK4P57078 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC32.92■■■□□ 2.86
RIPK4P57078 AC142086.6-201ENST00000621154 1765 ntBASIC32.91■■■□□ 2.86
RIPK4P57078 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
RIPK4P57078 GPX1-201ENST00000419349 1106 ntBASIC32.91■■■□□ 2.86
RIPK4P57078 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC32.91■■■□□ 2.86
RIPK4P57078 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC32.9■■■□□ 2.86
RIPK4P57078 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC32.9■■■□□ 2.86
RIPK4P57078 AC022413.1-201ENST00000624602 984 ntBASIC32.9■■■□□ 2.86
RIPK4P57078 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC32.89■■■□□ 2.86
RIPK4P57078 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC32.89■■■□□ 2.86
RIPK4P57078 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
RIPK4P57078 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
RIPK4P57078 LINC01003-201ENST00000564834 1764 ntBASIC32.88■■■□□ 2.85
RIPK4P57078 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
RIPK4P57078 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC32.87■■■□□ 2.85
RIPK4P57078 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC32.87■■■□□ 2.85
RIPK4P57078 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC32.87■■■□□ 2.85
RIPK4P57078 AC060814.1-201ENST00000554326 538 ntBASIC32.86■■■□□ 2.85
RIPK4P57078 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
RIPK4P57078 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
RIPK4P57078 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
RIPK4P57078 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
RIPK4P57078 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
RIPK4P57078 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC32.84■■■□□ 2.85
RIPK4P57078 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.83■■■□□ 2.85
RIPK4P57078 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.85
RIPK4P57078 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC32.82■■■□□ 2.85
RIPK4P57078 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
RIPK4P57078 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
RIPK4P57078 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.84
RIPK4P57078 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC32.82■■■□□ 2.84
RIPK4P57078 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC32.82■■■□□ 2.84
RIPK4P57078 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
RIPK4P57078 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
RIPK4P57078 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
RIPK4P57078 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC32.81■■■□□ 2.84
RIPK4P57078 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC32.81■■■□□ 2.84
RIPK4P57078 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
RIPK4P57078 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC32.81■■■□□ 2.84
RIPK4P57078 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC32.81■■■□□ 2.84
RIPK4P57078 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC32.81■■■□□ 2.84
RIPK4P57078 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
RIPK4P57078 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32.8■■■□□ 2.84
RIPK4P57078 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
RIPK4P57078 AL359258.2-201ENST00000564063 1566 ntBASIC32.79■■■□□ 2.84
RIPK4P57078 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
RIPK4P57078 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC32.78■■■□□ 2.84
RIPK4P57078 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
RIPK4P57078 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC32.78■■■□□ 2.84
RIPK4P57078 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC32.77■■■□□ 2.84
RIPK4P57078 BX255925.1-201ENST00000566954 1854 ntBASIC32.77■■■□□ 2.84
RIPK4P57078 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
RIPK4P57078 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.83
RIPK4P57078 BRD4-212ENST00000630599 726 ntTSL 2 BASIC32.76■■■□□ 2.83
RIPK4P57078 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.83
RIPK4P57078 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC32.75■■■□□ 2.83
RIPK4P57078 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC32.75■■■□□ 2.83
RIPK4P57078 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC32.75■■■□□ 2.83
RIPK4P57078 AC126177.7-201ENST00000547904 679 ntBASIC32.75■■■□□ 2.83
RIPK4P57078 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC32.73■■■□□ 2.83
RIPK4P57078 RNF126P1-201ENST00000567452 1320 ntBASIC32.71■■■□□ 2.83
RIPK4P57078 AC092296.2-201ENST00000589470 999 ntBASIC32.7■■■□□ 2.83
RIPK4P57078 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
RIPK4P57078 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
RIPK4P57078 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC32.68■■■□□ 2.82
RIPK4P57078 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC32.68■■■□□ 2.82
RIPK4P57078 WHAMMP3-201ENST00000611636 1609 ntBASIC32.68■■■□□ 2.82
RIPK4P57078 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC32.68■■■□□ 2.82
RIPK4P57078 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC32.67■■■□□ 2.82
RIPK4P57078 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
RIPK4P57078 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC32.67■■■□□ 2.82
RIPK4P57078 AL157400.5-201ENST00000507624 621 ntBASIC32.67■■■□□ 2.82
RIPK4P57078 MOB2-207ENST00000614710 705 ntTSL 5 BASIC32.67■■■□□ 2.82
RIPK4P57078 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
RIPK4P57078 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC32.67■■■□□ 2.82
RIPK4P57078 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
RIPK4P57078 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC32.67■■■□□ 2.82
RIPK4P57078 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
RIPK4P57078 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
RIPK4P57078 RARRES2P2-201ENST00000394842 485 ntBASIC32.66■■■□□ 2.82
RIPK4P57078 HES4-202ENST00000428771 1040 ntTSL 2 BASIC32.66■■■□□ 2.82
RIPK4P57078 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
RIPK4P57078 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
RIPK4P57078 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms