RNA–Protein interactions for RNA: ENST00000447669.6

RFFL-206, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RFFL, Length 2,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-206ENST00000447669 NISCHQ9Y2I1 1504 aa57.25■■■■■ 6.76
RFFL-206ENST00000447669 CCDC180Q9P1Z9 1646 aa49.97■■■■■ 5.59
RFFL-206ENST00000447669 ZCCHC6Q5VYS8 1495 aaKnown RBP47.99■■■■■ 5.27
RFFL-206ENST00000447669 ABCC9O60706 1549 aa47.92■■■■■ 5.26
RFFL-206ENST00000447669 DCAF8L2P0C7V8 631 aa47.71■■■■■ 5.23
RFFL-206ENST00000447669 DCAF1Q9Y4B6 1507 aa47.16■■■■■ 5.14
RFFL-206ENST00000447669 SHROOM4Q9ULL8 1493 aa46.73■■■■■ 5.07
RFFL-206ENST00000447669 MYO15BQ96JP2 1530 aa46.71■■■■■ 5.07
RFFL-206ENST00000447669 NACADO15069 1562 aa46.66■■■■■ 5.06
RFFL-206ENST00000447669 RB1CC1Q8TDY2 1594 aa46.4■■■■■ 5.02
RFFL-206ENST00000447669 SCRIBQ14160 1630 aa46.16■■■■■ 4.98
RFFL-206ENST00000447669 UNC13AQ9UPW8 1703 aa45.62■■■■■ 4.89
RFFL-206ENST00000447669 PABPN1Q86U42 306 aaKnown RBP eCLIP45.21■■■■■ 4.83
RFFL-206ENST00000447669 BICRAQ9NZM4 1560 aa45.13■■■■■ 4.81
RFFL-206ENST00000447669 SUPT5HO00267 1087 aaKnown RBP44.72■■■■■ 4.75
RFFL-206ENST00000447669 CECR2Q9BXF3 1484 aa44.68■■■■■ 4.74
RFFL-206ENST00000447669 MROH2BQ7Z745 1585 aa44.32■■■■■ 4.69
RFFL-206ENST00000447669 RSF1Q96T23 1441 aaPredicted RBP44.31■■■■■ 4.68
RFFL-206ENST00000447669 BAZ1AQ9NRL2 1556 aaPredicted RBP44.18■■■■■ 4.66
RFFL-206ENST00000447669 SMARCA4P51532 1647 aa44.11■■■■■ 4.65
RFFL-206ENST00000447669 WIZO95785 1651 aa43.97■■■■■ 4.63
RFFL-206ENST00000447669 EIF4G1Q04637 1599 aaKnown RBP43.77■■■■■ 4.6
RFFL-206ENST00000447669 ATAD2BQ9ULI0 1458 aa43.5■■■■■ 4.55
RFFL-206ENST00000447669 PEG3Q9GZU2 1588 aa43.48■■■■■ 4.55
RFFL-206ENST00000447669 SMARCA2P51531 1590 aa43.36■■■■■ 4.53
RFFL-206ENST00000447669 TOP2AP11388 1531 aaKnown RBP43.34■■■■■ 4.53
RFFL-206ENST00000447669 CC2D2AQ9P2K1 1620 aa43.28■■■■■ 4.52
RFFL-206ENST00000447669 BAZ1BQ9UIG0 1483 aaKnown RBP43.22■■■■■ 4.51
RFFL-206ENST00000447669 NCAPD3P42695 1498 aa43.12■■■■■ 4.49
RFFL-206ENST00000447669 CCDC88BA6NC98 1476 aa43■■■■■ 4.47
RFFL-206ENST00000447669 HMGXB3Q12766 1538 aa42.98■■■■■ 4.47
RFFL-206ENST00000447669 DNAJC5BQ9UF47 199 aa42.76■■■■■ 4.44
RFFL-206ENST00000447669 CHIC1Q5VXU3 224 aa42.49■■■■■ 4.39
RFFL-206ENST00000447669 CFTRP13569 1480 aa42.08■■■■■ 4.33
RFFL-206ENST00000447669 ABCC8Q09428 1581 aa42.06■■■■■ 4.32
RFFL-206ENST00000447669 CADPSQ9ULU8 1353 aa42.04■■■■■ 4.32
RFFL-206ENST00000447669 NESP48681 1621 aa41.98■■■■■ 4.31
RFFL-206ENST00000447669 TRIM41Q8WV44 630 aa41.95■■■■■ 4.31
RFFL-206ENST00000447669 PRDM2Q13029 1718 aa41.8■■■■■ 4.28
RFFL-206ENST00000447669 LAMC3Q9Y6N6 1575 aa41.7■■■■■ 4.27
RFFL-206ENST00000447669 WRNQ14191 1432 aaPredicted RBP eCLIP41.69■■■■■ 4.27
RFFL-206ENST00000447669 SYNJ1O43426 1573 aa41.61■■■■■ 4.25
RFFL-206ENST00000447669 FANCD2Q9BXW9 1451 aa41.6■■■■■ 4.25
RFFL-206ENST00000447669 CUX1P39880 1505 aa41.44■■■■■ 4.22
RFFL-206ENST00000447669 PDS5BQ9NTI5 1447 aa41.41■■■■■ 4.22
RFFL-206ENST00000447669 KIF21AQ7Z4S6 1674 aa41.39■■■■■ 4.22
RFFL-206ENST00000447669 TOP2BQ02880 1626 aa41.36■■■■■ 4.21
RFFL-206ENST00000447669 FAM9AQ8IZU1 332 aaPredicted RBP41.36■■■■■ 4.21
RFFL-206ENST00000447669 CEP164Q9UPV0 1460 aa41.34■■■■■ 4.21
RFFL-206ENST00000447669 BIVM-ERCC5R4GMW8 1640 aa41.31■■■■■ 4.2
RFFL-206ENST00000447669 SOGA1O94964 1423 aa41.17■■■■■ 4.18
RFFL-206ENST00000447669 URB2Q14146 1524 aaKnown RBP41.15■■■■■ 4.18
RFFL-206ENST00000447669 TOPBP1Q92547 1522 aa41.11■■■■■ 4.17
RFFL-206ENST00000447669 RUSC2Q8N2Y8 1516 aa41.1■■■■■ 4.17
RFFL-206ENST00000447669 DNMBPQ6XZF7 1577 aa41.09■■■■■ 4.17
RFFL-206ENST00000447669 FGD5Q6ZNL6 1462 aa41.04■■■■■ 4.16
RFFL-206ENST00000447669 ERCC6Q03468 1493 aa41.04■■■■■ 4.16
RFFL-206ENST00000447669 LOC105371045A0A1W2PR82 267 aa41.01■■■■■ 4.16
RFFL-206ENST00000447669 EHMT2Q96KQ7 1210 aa40.94■■■■■ 4.15
RFFL-206ENST00000447669 MRC2Q9UBG0 1479 aa40.93■■■■■ 4.14
RFFL-206ENST00000447669 POLA1P09884 1462 aaPredicted RBP40.9■■■■■ 4.14
RFFL-206ENST00000447669 RAD54L2Q9Y4B4 1467 aa40.86■■■■■ 4.13
RFFL-206ENST00000447669 THOC2Q8NI27 1593 aaKnown RBP40.74■■■■■ 4.11
RFFL-206ENST00000447669 CSRNP3Q8WYN3 585 aa40.74■■■■■ 4.11
RFFL-206ENST00000447669 WDR62O43379 1518 aa40.72■■■■■ 4.11
RFFL-206ENST00000447669 EEA1Q15075 1411 aa40.71■■■■■ 4.11
RFFL-206ENST00000447669 CUX2O14529 1486 aa40.7■■■■■ 4.11
RFFL-206ENST00000447669 KIF27Q86VH2 1401 aa40.63■■■■■ 4.09
RFFL-206ENST00000447669 ABCA10Q8WWZ4 1543 aa40.58■■■■■ 4.09
RFFL-206ENST00000447669 TARBP1Q13395 1621 aaKnown RBP40.52■■■■■ 4.08
RFFL-206ENST00000447669 WDR97A6NE52 1622 aa40.51■■■■■ 4.08
RFFL-206ENST00000447669 TDRD9Q8NDG6 1382 aaKnown RBP40.5■■■■■ 4.07
RFFL-206ENST00000447669 IGF1RP08069 1367 aa40.4■■■■■ 4.06
RFFL-206ENST00000447669 IFT140Q96RY7 1462 aa40.33■■■■■ 4.05
RFFL-206ENST00000447669 ZNF608Q9ULD9 1512 aaPredicted RBP40.32■■■■■ 4.05
RFFL-206ENST00000447669 RAPGEF2Q9Y4G8 1499 aa40.31■■■■■ 4.04
RFFL-206ENST00000447669 AQRO60306 1485 aaKnown RBP eCLIP40.31■■■■■ 4.045e-10■■■■■ 39.2
RFFL-206ENST00000447669 ABCA5Q8WWZ7 1642 aa40.31■■■■■ 4.04
RFFL-206ENST00000447669 KIF21BO75037 1637 aa40.3■■■■■ 4.04
RFFL-206ENST00000447669 GAPVD1Q14C86 1478 aa40.28■■■■■ 4.04
RFFL-206ENST00000447669 PRXQ9BXM0 1461 aa40.28■■■■■ 4.04
RFFL-206ENST00000447669 UBTFP17480 764 aaKnown RBP40.26■■■■■ 4.04
RFFL-206ENST00000447669 GOLGA3Q08378 1498 aa40.25■■■■■ 4.03
RFFL-206ENST00000447669 CARMIL1Q5VZK9 1371 aa40.17■■■■■ 4.02
RFFL-206ENST00000447669 PBRM1Q86U86 1689 aa40.09■■■■■ 4.01
RFFL-206ENST00000447669 EIF4G3O43432 1585 aaKnown RBP40.08■■■■■ 4.01
RFFL-206ENST00000447669 ERICH3Q5RHP9 1530 aa40.07■■■■■ 4.01
RFFL-206ENST00000447669 TNIKQ9UKE5 1360 aa40.06■■■■■ 4
RFFL-206ENST00000447669 CUL7Q14999 1698 aa39.99■■■■□ 3.99
RFFL-206ENST00000447669 GRIN2BQ13224 1484 aa39.98■■■■□ 3.99
RFFL-206ENST00000447669 RANGAP1P46060 587 aaPredicted RBP39.94■■■■□ 3.98
RFFL-206ENST00000447669 CEP162Q5TB80 1403 aa39.89■■■■□ 3.98
RFFL-206ENST00000447669 SNAPC4Q5SXM2 1469 aa39.85■■■■□ 3.97
RFFL-206ENST00000447669 ADAMTS12P58397 1594 aa39.81■■■■□ 3.96
RFFL-206ENST00000447669 FHAD1B1AJZ9 1412 aa39.78■■■■□ 3.96
RFFL-206ENST00000447669 CLIP1P30622 1438 aa39.66■■■■□ 3.94
RFFL-206ENST00000447669 MAGI1Q96QZ7 1491 aaPredicted RBP39.65■■■■□ 3.94
RFFL-206ENST00000447669 FBLN2P98095 1184 aa39.64■■■■□ 3.94
RFFL-206ENST00000447669 CHMP7Q8WUX9 453 aaPredicted RBP39.58■■■■□ 3.93
RFFL-206ENST00000447669 CTTNBP2Q8WZ74 1663 aa39.56■■■■□ 3.92
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms