Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
FOXN3O00409 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.8■■□□□ 1.88
FOXN3O00409 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
FOXN3O00409 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
FOXN3O00409 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.8■■□□□ 1.88
FOXN3O00409 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
FOXN3O00409 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
FOXN3O00409 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.78■■□□□ 1.88
FOXN3O00409 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.78■■□□□ 1.88
FOXN3O00409 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
FOXN3O00409 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.77■■□□□ 1.88
FOXN3O00409 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.77■■□□□ 1.88
FOXN3O00409 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.77■■□□□ 1.88
FOXN3O00409 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
FOXN3O00409 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
FOXN3O00409 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.76■■□□□ 1.87
FOXN3O00409 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
FOXN3O00409 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
FOXN3O00409 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
FOXN3O00409 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.75■■□□□ 1.87
FOXN3O00409 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
FOXN3O00409 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
FOXN3O00409 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC26.74■■□□□ 1.87
FOXN3O00409 AL449106.1-201ENST00000608517 1980 ntBASIC26.74■■□□□ 1.87
FOXN3O00409 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.74■■□□□ 1.87
FOXN3O00409 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
FOXN3O00409 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.73■■□□□ 1.87
FOXN3O00409 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
FOXN3O00409 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
FOXN3O00409 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.72■■□□□ 1.87
FOXN3O00409 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
FOXN3O00409 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
FOXN3O00409 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.7■■□□□ 1.86
FOXN3O00409 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.7■■□□□ 1.86
FOXN3O00409 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
FOXN3O00409 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.7■■□□□ 1.86
FOXN3O00409 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
FOXN3O00409 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
FOXN3O00409 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
FOXN3O00409 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
FOXN3O00409 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
FOXN3O00409 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
FOXN3O00409 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
FOXN3O00409 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.67■■□□□ 1.86
FOXN3O00409 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.67■■□□□ 1.86
FOXN3O00409 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
FOXN3O00409 WHAMMP3-201ENST00000611636 1609 ntBASIC26.66■■□□□ 1.86
FOXN3O00409 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
FOXN3O00409 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
FOXN3O00409 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.65■■□□□ 1.86
FOXN3O00409 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
FOXN3O00409 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.65■■□□□ 1.86
FOXN3O00409 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
FOXN3O00409 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
FOXN3O00409 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
FOXN3O00409 AC008813.1-201ENST00000536597 885 ntBASIC26.64■■□□□ 1.86
FOXN3O00409 CR559946.2-201ENST00000623684 991 ntBASIC26.64■■□□□ 1.86
FOXN3O00409 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
FOXN3O00409 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
FOXN3O00409 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
FOXN3O00409 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.85
FOXN3O00409 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
FOXN3O00409 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
FOXN3O00409 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
FOXN3O00409 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.63■■□□□ 1.85
FOXN3O00409 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
FOXN3O00409 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.63■■□□□ 1.85
FOXN3O00409 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
FOXN3O00409 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
FOXN3O00409 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
FOXN3O00409 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.62■■□□□ 1.85
FOXN3O00409 HLA-V-202ENST00000446817 847 ntBASIC26.62■■□□□ 1.85
FOXN3O00409 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
FOXN3O00409 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
FOXN3O00409 AP004609.3-201ENST00000610705 1884 ntBASIC26.62■■□□□ 1.85
FOXN3O00409 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
FOXN3O00409 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
FOXN3O00409 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
FOXN3O00409 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.61■■□□□ 1.85
FOXN3O00409 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
FOXN3O00409 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
FOXN3O00409 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
FOXN3O00409 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.6■■□□□ 1.85
FOXN3O00409 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
FOXN3O00409 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.6■■□□□ 1.85
FOXN3O00409 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
FOXN3O00409 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
FOXN3O00409 MIR219A2-201ENST00000608502 1504 ntBASIC26.6■■□□□ 1.85
FOXN3O00409 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.6■■□□□ 1.85
FOXN3O00409 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.59■■□□□ 1.85
FOXN3O00409 MIR3648-2-201ENST00000581792 180 ntBASIC26.59■■□□□ 1.85
FOXN3O00409 MIR3648-1-201ENST00000615959 180 ntBASIC26.59■■□□□ 1.85
FOXN3O00409 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
FOXN3O00409 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC26.58■■□□□ 1.85
FOXN3O00409 AC148477.6-201ENST00000623746 465 ntBASIC26.58■■□□□ 1.85
FOXN3O00409 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.58■■□□□ 1.85
FOXN3O00409 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.58■■□□□ 1.85
FOXN3O00409 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
FOXN3O00409 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.84
FOXN3O00409 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms