Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV41A0A0B4J266 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV41A0A0B4J266 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
TRAV41A0A0B4J266 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV41A0A0B4J266 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV41A0A0B4J266 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.66■□□□□ 0.74
TRAV41A0A0B4J266 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV41A0A0B4J266 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV41A0A0B4J266 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.66■□□□□ 0.74
TRAV41A0A0B4J266 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV41A0A0B4J266 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV41A0A0B4J266 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV41A0A0B4J266 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.65■□□□□ 0.74
TRAV41A0A0B4J266 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV41A0A0B4J266 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV41A0A0B4J266 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV41A0A0B4J266 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV41A0A0B4J266 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV41A0A0B4J266 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC19.65■□□□□ 0.74
TRAV41A0A0B4J266 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV41A0A0B4J266 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.64■□□□□ 0.73
TRAV41A0A0B4J266 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV41A0A0B4J266 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV41A0A0B4J266 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV41A0A0B4J266 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV41A0A0B4J266 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TRAV41A0A0B4J266 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV41A0A0B4J266 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
TRAV41A0A0B4J266 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TRAV41A0A0B4J266 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV41A0A0B4J266 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV41A0A0B4J266 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV41A0A0B4J266 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC19.62■□□□□ 0.73
TRAV41A0A0B4J266 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.62■□□□□ 0.73
TRAV41A0A0B4J266 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TRAV41A0A0B4J266 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV41A0A0B4J266 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV41A0A0B4J266 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC19.61■□□□□ 0.73
TRAV41A0A0B4J266 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.61■□□□□ 0.73
TRAV41A0A0B4J266 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV41A0A0B4J266 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.61■□□□□ 0.73
TRAV41A0A0B4J266 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV41A0A0B4J266 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.6■□□□□ 0.73
TRAV41A0A0B4J266 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
TRAV41A0A0B4J266 AC126177.7-201ENST00000547904 679 ntBASIC19.6■□□□□ 0.73
TRAV41A0A0B4J266 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV41A0A0B4J266 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRAV41A0A0B4J266 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.59■□□□□ 0.73
TRAV41A0A0B4J266 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.59■□□□□ 0.73
TRAV41A0A0B4J266 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV41A0A0B4J266 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV41A0A0B4J266 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
TRAV41A0A0B4J266 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.58■□□□□ 0.73
TRAV41A0A0B4J266 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRAV41A0A0B4J266 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV41A0A0B4J266 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.58■□□□□ 0.72
TRAV41A0A0B4J266 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV41A0A0B4J266 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV41A0A0B4J266 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV41A0A0B4J266 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TRAV41A0A0B4J266 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.56■□□□□ 0.72
TRAV41A0A0B4J266 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.56■□□□□ 0.72
TRAV41A0A0B4J266 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.56■□□□□ 0.72
TRAV41A0A0B4J266 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV41A0A0B4J266 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV41A0A0B4J266 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV41A0A0B4J266 WHAMMP3-201ENST00000611636 1609 ntBASIC19.55■□□□□ 0.72
TRAV41A0A0B4J266 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV41A0A0B4J266 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV41A0A0B4J266 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV41A0A0B4J266 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRAV41A0A0B4J266 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC19.54■□□□□ 0.72
TRAV41A0A0B4J266 AL359258.2-201ENST00000564063 1566 ntBASIC19.54■□□□□ 0.72
TRAV41A0A0B4J266 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV41A0A0B4J266 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV41A0A0B4J266 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.54■□□□□ 0.72
TRAV41A0A0B4J266 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.54■□□□□ 0.72
TRAV41A0A0B4J266 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV41A0A0B4J266 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV41A0A0B4J266 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
TRAV41A0A0B4J266 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV41A0A0B4J266 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.52■□□□□ 0.72
TRAV41A0A0B4J266 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV41A0A0B4J266 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.52■□□□□ 0.72
TRAV41A0A0B4J266 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.52■□□□□ 0.71
TRAV41A0A0B4J266 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TRAV41A0A0B4J266 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV41A0A0B4J266 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.51■□□□□ 0.71
TRAV41A0A0B4J266 AC022413.1-201ENST00000624602 984 ntBASIC19.51■□□□□ 0.71
TRAV41A0A0B4J266 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV41A0A0B4J266 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV41A0A0B4J266 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms