RNA–Protein interactions for RNA: ENST00000250489.8

TMEM55B-201, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TMEM55B, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM55B-201ENST00000250489 NISCHQ9Y2I1 1504 aa54.65■■■■■ 6.34
TMEM55B-201ENST00000250489 CCDC180Q9P1Z9 1646 aa47.08■■■■■ 5.13
TMEM55B-201ENST00000250489 ZCCHC6Q5VYS8 1495 aaKnown RBP46.12■■■■■ 4.97
TMEM55B-201ENST00000250489 SHROOM4Q9ULL8 1493 aa45.5■■■■■ 4.87
TMEM55B-201ENST00000250489 DCAF1Q9Y4B6 1507 aa45.08■■■■■ 4.81
TMEM55B-201ENST00000250489 DCAF8L2P0C7V8 631 aa44.96■■■■■ 4.79
TMEM55B-201ENST00000250489 SUPT5HO00267 1087 aaKnown RBP44.25■■■■■ 4.67
TMEM55B-201ENST00000250489 MYO15BQ96JP2 1530 aa44.13■■■■■ 4.65
TMEM55B-201ENST00000250489 ABCC9O60706 1549 aa43.81■■■■■ 4.6
TMEM55B-201ENST00000250489 SCRIBQ14160 1630 aa43.62■■■■■ 4.57
TMEM55B-201ENST00000250489 NACADO15069 1562 aa43.62■■■■■ 4.57
TMEM55B-201ENST00000250489 RB1CC1Q8TDY2 1594 aa43.03■■■■■ 4.48
TMEM55B-201ENST00000250489 CHIC1Q5VXU3 224 aa42.85■■■■■ 4.45
TMEM55B-201ENST00000250489 RSF1Q96T23 1441 aaPredicted RBP42.84■■■■■ 4.45
TMEM55B-201ENST00000250489 CECR2Q9BXF3 1484 aa42.49■■■■■ 4.39
TMEM55B-201ENST00000250489 MROH2BQ7Z745 1585 aa42.34■■■■■ 4.37
TMEM55B-201ENST00000250489 UNC13AQ9UPW8 1703 aa42.31■■■■■ 4.36
TMEM55B-201ENST00000250489 BAZ1AQ9NRL2 1556 aaPredicted RBP42.08■■■■■ 4.33
TMEM55B-201ENST00000250489 WIZO95785 1651 aa42.06■■■■■ 4.32
TMEM55B-201ENST00000250489 BICRAQ9NZM4 1560 aa41.82■■■■■ 4.29
TMEM55B-201ENST00000250489 SMARCA4P51532 1647 aa41.8■■■■■ 4.28
TMEM55B-201ENST00000250489 PABPN1Q86U42 306 aaKnown RBP eCLIP41.58■■■■■ 4.25
TMEM55B-201ENST00000250489 TOP2AP11388 1531 aaKnown RBP41.55■■■■■ 4.24
TMEM55B-201ENST00000250489 TRIM41Q8WV44 630 aa41.44■■■■■ 4.22
TMEM55B-201ENST00000250489 EIF4G1Q04637 1599 aaKnown RBP41.34■■■■■ 4.21
TMEM55B-201ENST00000250489 LOC105371045A0A1W2PR82 267 aa41.33■■■■■ 4.21
TMEM55B-201ENST00000250489 SMARCA2P51531 1590 aa41.24■■■■■ 4.19
TMEM55B-201ENST00000250489 CCDC88BA6NC98 1476 aa41.21■■■■■ 4.19
TMEM55B-201ENST00000250489 PEG3Q9GZU2 1588 aa41.19■■■■■ 4.18
TMEM55B-201ENST00000250489 ATAD2BQ9ULI0 1458 aa40.87■■■■■ 4.13
TMEM55B-201ENST00000250489 FAM9AQ8IZU1 332 aaPredicted RBP40.84■■■■■ 4.13
TMEM55B-201ENST00000250489 ABCC8Q09428 1581 aa40.74■■■■■ 4.11
TMEM55B-201ENST00000250489 BAZ1BQ9UIG0 1483 aaKnown RBP40.69■■■■■ 4.1
TMEM55B-201ENST00000250489 PCGF6Q9BYE7 350 aa40.49■■■■■ 4.07
TMEM55B-201ENST00000250489 EHMT2Q96KQ7 1210 aa40.32■■■■■ 4.04
TMEM55B-201ENST00000250489 HMGXB3Q12766 1538 aa40.31■■■■■ 4.04
TMEM55B-201ENST00000250489 NCAPD3P42695 1498 aa40.3■■■■■ 4.04
TMEM55B-201ENST00000250489 WRNQ14191 1432 aaPredicted RBP eCLIP40.27■■■■■ 4.04
TMEM55B-201ENST00000250489 SOGA1O94964 1423 aa40.18■■■■■ 4.02
TMEM55B-201ENST00000250489 EEA1Q15075 1411 aa40.14■■■■■ 4.02
TMEM55B-201ENST00000250489 TRIM26Q12899 539 aaPredicted RBP40.14■■■■■ 4.02
TMEM55B-201ENST00000250489 HRCP23327 699 aa40.12■■■■■ 4.01
TMEM55B-201ENST00000250489 SYNJ1O43426 1573 aa40.12■■■■■ 4.01
TMEM55B-201ENST00000250489 RUSC2Q8N2Y8 1516 aa40■■■■□ 3.99
TMEM55B-201ENST00000250489 CSRNP3Q8WYN3 585 aa39.92■■■■□ 3.98
TMEM55B-201ENST00000250489 TOP2BQ02880 1626 aa39.8■■■■□ 3.96
TMEM55B-201ENST00000250489 TNIKQ9UKE5 1360 aa39.77■■■■□ 3.96
TMEM55B-201ENST00000250489 BIVM-ERCC5R4GMW8 1640 aa39.73■■■■□ 3.95
TMEM55B-201ENST00000250489 CFTRP13569 1480 aa39.71■■■■□ 3.95
TMEM55B-201ENST00000250489 GOLGA3Q08378 1498 aa39.71■■■■□ 3.95
TMEM55B-201ENST00000250489 CEP162Q5TB80 1403 aa39.69■■■■□ 3.94
TMEM55B-201ENST00000250489 KIF21BO75037 1637 aa39.62■■■■□ 3.93
TMEM55B-201ENST00000250489 CC2D2AQ9P2K1 1620 aa39.62■■■■□ 3.93
TMEM55B-201ENST00000250489 CEP164Q9UPV0 1460 aa39.59■■■■□ 3.93
TMEM55B-201ENST00000250489 UBTFP17480 764 aaKnown RBP39.54■■■■□ 3.92
TMEM55B-201ENST00000250489 PRDM2Q13029 1718 aa39.52■■■■□ 3.92
TMEM55B-201ENST00000250489 CUX1P39880 1505 aa39.5■■■■□ 3.91
TMEM55B-201ENST00000250489 CADPSQ9ULU8 1353 aa39.37■■■■□ 3.89
TMEM55B-201ENST00000250489 PPARGC1BQ86YN6 1023 aaKnown RBP39.36■■■■□ 3.89
TMEM55B-201ENST00000250489 RAPGEF2Q9Y4G8 1499 aa39.3■■■■□ 3.88
TMEM55B-201ENST00000250489 ERICH3Q5RHP9 1530 aa39.15■■■■□ 3.86
TMEM55B-201ENST00000250489 PRXQ9BXM0 1461 aa39.15■■■■□ 3.86
TMEM55B-201ENST00000250489 CLIP1P30622 1438 aa39.14■■■■□ 3.86
TMEM55B-201ENST00000250489 KIF27Q86VH2 1401 aa39.13■■■■□ 3.85
TMEM55B-201ENST00000250489 ZEB1P37275 1124 aaPredicted RBP38.99■■■■□ 3.83
TMEM55B-201ENST00000250489 FANCD2Q9BXW9 1451 aa38.97■■■■□ 3.83
TMEM55B-201ENST00000250489 VPS8Q8N3P4 1428 aa38.93■■■■□ 3.82
TMEM55B-201ENST00000250489 FGD5Q6ZNL6 1462 aa38.91■■■■□ 3.82
TMEM55B-201ENST00000250489 CUX2O14529 1486 aa38.85■■■■□ 3.81
TMEM55B-201ENST00000250489 TTBK1Q5TCY1 1321 aaPredicted RBP38.85■■■■□ 3.81
TMEM55B-201ENST00000250489 NESP48681 1621 aa38.81■■■■□ 3.8
TMEM55B-201ENST00000250489 DNMBPQ6XZF7 1577 aa38.77■■■■□ 3.8
TMEM55B-201ENST00000250489 LAMC3Q9Y6N6 1575 aa38.74■■■■□ 3.79
TMEM55B-201ENST00000250489 IGF1RP08069 1367 aa38.72■■■■□ 3.79
TMEM55B-201ENST00000250489 RANGAP1P46060 587 aaPredicted RBP38.71■■■■□ 3.79
TMEM55B-201ENST00000250489 TOPBP1Q92547 1522 aa38.66■■■■□ 3.78
TMEM55B-201ENST00000250489 ARAP1Q96P48 1450 aa38.66■■■■□ 3.78
TMEM55B-201ENST00000250489 POLA1P09884 1462 aaPredicted RBP38.56■■■■□ 3.76
TMEM55B-201ENST00000250489 APLP2Q06481 763 aa38.53■■■■□ 3.76
TMEM55B-201ENST00000250489 CARMIL1Q5VZK9 1371 aa38.53■■■■□ 3.76
TMEM55B-201ENST00000250489 ABCA10Q8WWZ4 1543 aa38.53■■■■□ 3.76
TMEM55B-201ENST00000250489 RAD54L2Q9Y4B4 1467 aa38.51■■■■□ 3.76
TMEM55B-201ENST00000250489 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.51■■■■□ 3.76
TMEM55B-201ENST00000250489 DNAJC5BQ9UF47 199 aa38.48■■■■□ 3.75
TMEM55B-201ENST00000250489 URB2Q14146 1524 aaKnown RBP38.46■■■■□ 3.75
TMEM55B-201ENST00000250489 ARHGAP35Q9NRY4 1499 aa38.45■■■■□ 3.75
TMEM55B-201ENST00000250489 PDS5BQ9NTI5 1447 aa38.42■■■■□ 3.74
TMEM55B-201ENST00000250489 CCER1Q8TC90 406 aaPredicted RBP38.42■■■■□ 3.74
TMEM55B-201ENST00000250489 WDR97A6NE52 1622 aa38.33■■■■□ 3.73
TMEM55B-201ENST00000250489 KIF21AQ7Z4S6 1674 aa38.29■■■■□ 3.72
TMEM55B-201ENST00000250489 CUL7Q14999 1698 aa38.26■■■■□ 3.71
TMEM55B-201ENST00000250489 ABCA5Q8WWZ7 1642 aa38.15■■■■□ 3.7
TMEM55B-201ENST00000250489 KANK4Q5T7N3 995 aaPredicted RBP38.13■■■■□ 3.7
TMEM55B-201ENST00000250489 HNRNPUL2Q1KMD3 747 aaKnown RBP38.1■■■■□ 3.69
TMEM55B-201ENST00000250489 TDRD9Q8NDG6 1382 aaKnown RBP38.04■■■■□ 3.68
TMEM55B-201ENST00000250489 GAPVD1Q14C86 1478 aa38.02■■■■□ 3.68
TMEM55B-201ENST00000250489 CTTNBP2Q8WZ74 1663 aa38.02■■■■□ 3.68
TMEM55B-201ENST00000250489 TARBP1Q13395 1621 aaKnown RBP37.99■■■■□ 3.67
TMEM55B-201ENST00000250489 MAP3K1Q13233 1512 aa37.99■■■■□ 3.67
TMEM55B-201ENST00000250489 EFCAB5A4FU69 1503 aa37.95■■■■□ 3.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms