Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC33.6■■■□□ 2.97
PCDHB1Q9Y5F3 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
PCDHB1Q9Y5F3 AL356512.1-201ENST00000607453 1739 ntBASIC32.89■■■□□ 2.86
PCDHB1Q9Y5F3 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32.88■■■□□ 2.85
PCDHB1Q9Y5F3 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.79■■■□□ 2.84
PCDHB1Q9Y5F3 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.62■■■□□ 2.81
PCDHB1Q9Y5F3 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
PCDHB1Q9Y5F3 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
PCDHB1Q9Y5F3 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.45■■■□□ 2.79
PCDHB1Q9Y5F3 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.32■■■□□ 2.76
PCDHB1Q9Y5F3 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.26■■■□□ 2.76
PCDHB1Q9Y5F3 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.98■■■□□ 2.71
PCDHB1Q9Y5F3 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC31.97■■■□□ 2.71
PCDHB1Q9Y5F3 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
PCDHB1Q9Y5F3 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
PCDHB1Q9Y5F3 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.47■■■□□ 2.63
PCDHB1Q9Y5F3 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.4■■■□□ 2.62
PCDHB1Q9Y5F3 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCDHB1Q9Y5F3 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
PCDHB1Q9Y5F3 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.23■■■□□ 2.59
PCDHB1Q9Y5F3 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.23■■■□□ 2.59
PCDHB1Q9Y5F3 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
PCDHB1Q9Y5F3 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
PCDHB1Q9Y5F3 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.97■■■□□ 2.55
PCDHB1Q9Y5F3 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.91■■■□□ 2.54
PCDHB1Q9Y5F3 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
PCDHB1Q9Y5F3 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
PCDHB1Q9Y5F3 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
PCDHB1Q9Y5F3 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
PCDHB1Q9Y5F3 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
PCDHB1Q9Y5F3 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.51
PCDHB1Q9Y5F3 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PCDHB1Q9Y5F3 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
PCDHB1Q9Y5F3 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
PCDHB1Q9Y5F3 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
PCDHB1Q9Y5F3 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
PCDHB1Q9Y5F3 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
PCDHB1Q9Y5F3 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.48■■■□□ 2.47
PCDHB1Q9Y5F3 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
PCDHB1Q9Y5F3 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
PCDHB1Q9Y5F3 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
PCDHB1Q9Y5F3 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
PCDHB1Q9Y5F3 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.32■■■□□ 2.44
PCDHB1Q9Y5F3 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
PCDHB1Q9Y5F3 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
PCDHB1Q9Y5F3 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.26■■■□□ 2.43
PCDHB1Q9Y5F3 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
PCDHB1Q9Y5F3 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
PCDHB1Q9Y5F3 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.2■■■□□ 2.43
PCDHB1Q9Y5F3 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
PCDHB1Q9Y5F3 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
PCDHB1Q9Y5F3 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.03■■■□□ 2.4
PCDHB1Q9Y5F3 ZNRF2P1-201ENST00000441407 443 ntBASIC29.97■■■□□ 2.39
PCDHB1Q9Y5F3 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC29.97■■■□□ 2.39
PCDHB1Q9Y5F3 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
PCDHB1Q9Y5F3 AC006077.2-201ENST00000623591 457 ntBASIC29.95■■■□□ 2.39
PCDHB1Q9Y5F3 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
PCDHB1Q9Y5F3 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
PCDHB1Q9Y5F3 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.8■■■□□ 2.36
PCDHB1Q9Y5F3 AC015813.7-201ENST00000623294 581 ntBASIC29.79■■■□□ 2.36
PCDHB1Q9Y5F3 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCDHB1Q9Y5F3 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.77■■■□□ 2.36
PCDHB1Q9Y5F3 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.67■■■□□ 2.34
PCDHB1Q9Y5F3 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
PCDHB1Q9Y5F3 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
PCDHB1Q9Y5F3 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.62■■■□□ 2.33
PCDHB1Q9Y5F3 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.5■■■□□ 2.31
PCDHB1Q9Y5F3 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.49■■■□□ 2.31
PCDHB1Q9Y5F3 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.49■■■□□ 2.31
PCDHB1Q9Y5F3 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
PCDHB1Q9Y5F3 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PCDHB1Q9Y5F3 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.43■■■□□ 2.3
PCDHB1Q9Y5F3 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.42■■■□□ 2.3
PCDHB1Q9Y5F3 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
PCDHB1Q9Y5F3 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
PCDHB1Q9Y5F3 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
PCDHB1Q9Y5F3 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.29■■■□□ 2.28
PCDHB1Q9Y5F3 AP002365.1-201ENST00000603448 772 ntBASIC29.25■■■□□ 2.27
PCDHB1Q9Y5F3 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHB1Q9Y5F3 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
PCDHB1Q9Y5F3 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.2■■■□□ 2.26
PCDHB1Q9Y5F3 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.18■■■□□ 2.26
PCDHB1Q9Y5F3 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
PCDHB1Q9Y5F3 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
PCDHB1Q9Y5F3 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
PCDHB1Q9Y5F3 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC29.05■■■□□ 2.24
PCDHB1Q9Y5F3 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC29.05■■■□□ 2.24
PCDHB1Q9Y5F3 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC29.04■■■□□ 2.24
PCDHB1Q9Y5F3 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
PCDHB1Q9Y5F3 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.03■■■□□ 2.24
PCDHB1Q9Y5F3 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PCDHB1Q9Y5F3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
PCDHB1Q9Y5F3 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
PCDHB1Q9Y5F3 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29■■■□□ 2.23
PCDHB1Q9Y5F3 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
PCDHB1Q9Y5F3 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.97■■■□□ 2.23
PCDHB1Q9Y5F3 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
PCDHB1Q9Y5F3 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC28.95■■■□□ 2.22
PCDHB1Q9Y5F3 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
PCDHB1Q9Y5F3 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.94■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms